Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 4.9e-107 391.3 226 100.0
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 5.8e-52 208.4 195 68.7
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 8.4e-51 204.5 160 78.1
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 1.9e-50 203.4 167 74.9
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.9e-50 203.4 168 75.6
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 2.5e-50 203.0 162 76.5
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 2.5e-50 203.0 162 75.9
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 2.5e-50 203.0 162 76.5
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 2.5e-50 203.0 162 76.5
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 3.2e-50 202.6 162 76.5
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 3.2e-50 202.6 162 76.5
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 4.2e-50 202.2 168 75.0
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 4.2e-50 202.2 168 74.4
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 4.2e-50 202.2 162 76.5
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 5.5e-50 201.8 162 75.9
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 5.5e-50 201.8 162 75.9
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 5.5e-50 201.8 162 75.9
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 5.5e-50 201.8 160 77.5
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 5.5e-50 201.8 162 75.3
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 5.5e-50 201.8 162 75.9
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 7.2e-50 201.4 168 74.4
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 7.2e-50 201.4 171 72.5
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 76.5
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 7.2e-50 201.4 159 77.4
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 7.2e-50 201.4 159 77.4
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 76.5
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 7.2e-50 201.4 162 75.9
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 9.3e-50 201.1 168 74.4
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 9.3e-50 201.1 168 74.4
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 9.3e-50 201.1 168 74.4
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 9.3e-50 201.1 162 75.9
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 9.3e-50 201.1 168 74.4
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 9.3e-50 201.1 162 75.9
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 9.3e-50 201.1 162 75.9
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.3e-50 201.1 162 75.3
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 9.3e-50 201.1 162 75.3
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 9.3e-50 201.1 159 77.4
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 9.3e-50 201.1 162 75.9
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 9.3e-50 201.1 162 76.5
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 9.3e-50 201.1 162 75.9
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 9.3e-50 201.1 162 75.9
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.2e-49 200.7 168 74.4
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.2e-49 200.7 168 74.4
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.2e-49 200.7 162 75.9
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 1.2e-49 200.7 168 74.4
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.2e-49 200.7 168 74.4
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.2e-49 200.7 168 74.4
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.2e-49 200.7 162 75.9
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.2e-49 200.7 193 66.8
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.2e-49 200.7 159 77.4
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 1.2e-49 200.7 162 75.3
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 1.2e-49 200.7 159 77.4
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 1.2e-49 200.7 159 77.4
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.2e-49 200.7 162 75.9
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.2e-49 200.7 168 74.4
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 1.2e-49 200.7 162 75.9
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.2e-49 200.7 168 74.4
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.2e-49 200.7 162 75.3
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 1.2e-49 200.7 162 75.9
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 1.6e-49 200.3 162 75.3
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.6e-49 200.3 162 75.3
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.1e-49 199.9 159 77.4
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 2.1e-49 199.9 162 75.3
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 2.1e-49 199.9 162 75.3
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 2.1e-49 199.9 162 75.9
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 2.1e-49 199.9 162 75.3
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 2.1e-49 199.9 162 75.3
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 2.1e-49 199.9 162 75.3
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 2.1e-49 199.9 162 75.3
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 74.4
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.1e-49 199.9 162 75.3
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.1e-49 199.9 168 73.8
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.7e-49 199.5 162 75.3
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.7e-49 199.5 162 75.3
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 2.7e-49 199.5 168 73.8
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.7e-49 199.5 168 73.8
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 2.7e-49 199.5 168 73.8
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 2.7e-49 199.5 162 75.3
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 2.7e-49 199.5 161 75.2
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.7e-49 199.5 161 75.2
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 3.5e-49 199.1 159 76.7
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.5e-49 199.1 162 74.7
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.5e-49 199.1 162 75.3
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.5e-49 199.1 162 75.3
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.5e-49 199.1 162 75.3
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 3.5e-49 199.1 162 75.3
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 3.5e-49 199.1 162 75.3
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 3.5e-49 199.1 155 79.4
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 4.6e-49 198.7 162 74.7
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 4.6e-49 198.7 168 73.8
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 4.6e-49 198.7 162 74.7
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 4.6e-49 198.7 168 73.8
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.1e-49 198.4 162 75.3
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 6.1e-49 198.4 162 75.3
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 6.1e-49 198.4 162 75.3
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 6.1e-49 198.4 162 75.3
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 6.1e-49 198.4 162 75.3
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 6.1e-49 198.4 162 75.3
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 6.1e-49 198.4 162 75.3
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 7.9e-49 198.0 160 77.5
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 7.9e-49 198.0 159 76.7
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.0e-48 197.6 162 74.7
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 1.0e-48 197.6 162 75.3
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.0e-48 197.6 162 75.3
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.3e-48 197.2 213 62.9
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 2.3e-48 196.4 162 74.1
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 3.0e-48 196.1 162 74.1
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 3.0e-48 196.1 162 74.1
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.0e-48 196.1 162 74.7
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 3.9e-48 195.7 200 66.0
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.9e-48 195.7 160 76.9
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 5.1e-48 195.3 151 79.5
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 5.1e-48 195.3 224 61.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 6.7e-48 194.9 160 73.1
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 7.4e-47 191.4 148 80.4
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 1.8e-45 186.8 148 74.3
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.2e-43 179.9 131 84.7
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.5e-42 176.4 218 45.9
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.6e-41 172.6 130 78.5
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 3.0e-40 169.5 135 80.7
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.4e-39 164.9 151 58.9
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.4e-37 160.6 130 79.2
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.8e-37 160.2 130 79.2
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 3.1e-37 159.5 130 78.5
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.2e-36 157.5 187 62.6
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.0e-35 154.5 168 59.5
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.8e-32 143.7 92 73.9
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 5.3e-29 132.1 162 47.5
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.5e-27 125.2 170 45.9
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.1e-26 124.4 80 76.2
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 5.7e-23 112.1 107 56.1
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 3.1e-21 106.3 68 69.1
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 9.1e-21 104.8 71 66.2
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 3.5e-20 102.8 68 66.2
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 5.0e-19 99.0 92 55.4
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 8.3e-14 81.6 79 57.0
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 3.2e-10 69.7 109 37.6
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 2.7e-09 66.6 47 66.0
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 115 43.5
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.8e-06 56.6 40 62.5


User provided reference genes

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