Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 1.7e-168 595.9 290 100.0
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.4e-10 70.5 91 35.2
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 6.0e-09 65.9 92 39.1
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 6.0e-09 65.9 90 36.7
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.0e-08 65.1 86 41.9
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.8e-08 64.3 99 36.4
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.8e-08 64.3 95 35.8
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 2.3e-08 63.9 87 36.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 3.0e-08 63.5 99 36.4
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.0e-08 63.5 93 37.6
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 3.9e-08 63.2 92 37.0
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 3.9e-08 63.2 94 34.0
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 6.7e-08 62.4 93 34.4
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 6.7e-08 62.4 93 34.4
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 8.7e-08 62.0 86 36.0
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.1e-07 61.6 85 36.5
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.9e-07 60.8 85 36.5
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 1.9e-07 60.8 87 34.5
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.9e-07 60.8 87 34.5
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 3.3e-07 60.1 86 34.9
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.3e-07 59.7 87 35.6
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 4.3e-07 59.7 92 35.9
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 4.3e-07 59.7 87 34.5
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 4.3e-07 59.7 87 34.5
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 4.3e-07 59.7 81 37.0
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 4.3e-07 59.7 92 34.8
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.6e-07 59.3 94 33.0
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.6e-07 59.3 86 34.9
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 5.6e-07 59.3 92 35.9
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 5.6e-07 59.3 86 34.9
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 7.4e-07 58.9 92 35.9
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 7.4e-07 58.9 87 34.5
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 7.4e-07 58.9 87 34.5
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 7.4e-07 58.9 87 34.5
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 7.4e-07 58.9 92 35.9
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 7.4e-07 58.9 86 34.9
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 9.6e-07 58.5 92 37.0
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 9.6e-07 58.5 92 34.8
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 9.6e-07 58.5 87 35.6
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 9.6e-07 58.5 95 32.6
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.3e-06 58.2 87 34.5
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.3e-06 58.2 85 34.1
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.6e-06 57.8 109 33.9
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.6e-06 57.8 103 35.9
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.6e-06 57.8 87 34.5
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 1.6e-06 57.8 87 33.3
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 2.1e-06 57.4 87 34.5
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 2.1e-06 57.4 87 33.3
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 2.8e-06 57.0 96 32.3
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.8e-06 57.0 87 34.5
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.8e-06 57.0 87 34.5
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 2.8e-06 57.0 92 34.8
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 2.8e-06 57.0 86 37.2
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.8e-06 57.0 86 37.2
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.8e-06 57.0 86 37.2
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 32.2
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.8e-06 57.0 87 34.5
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 3.7e-06 56.6 87 34.5
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 3.7e-06 56.6 87 34.5
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 3.7e-06 56.6 87 34.5
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.7e-06 56.6 92 33.7
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 3.7e-06 56.6 92 32.6
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 3.7e-06 56.6 85 35.3
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 3.7e-06 56.6 92 37.0
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 4.8e-06 56.2 87 32.2
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.2e-06 55.8 86 36.0
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.2e-06 55.8 86 36.0
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 6.2e-06 55.8 87 33.3
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 8.1e-06 55.5 86 31.4


User provided reference genes

Program Settings