Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 4.5e-283 977.2 489 100.0
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.3e-88 331.3 463 41.0
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.9e-88 330.1 461 39.9
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.9e-87 327.4 479 39.9
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 3.2e-87 326.6 462 41.1
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 9.3e-87 325.1 471 39.3
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.2e-86 324.7 461 40.1
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-86 324.7 460 40.0
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.2e-86 324.7 460 40.0
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.1e-86 323.9 476 40.3
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.7e-86 323.6 459 40.1
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 3.5e-86 323.2 465 39.8
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 3.5e-86 323.2 465 39.8
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.5e-86 323.2 463 39.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 4.6e-86 322.8 496 39.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.0e-85 321.6 461 39.7
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.3e-85 321.2 469 40.1
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.3e-85 320.5 465 39.4
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 2.3e-85 320.5 477 39.2
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 3.9e-85 319.7 472 40.0
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.1e-84 318.2 463 40.2
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.1e-84 318.2 472 39.4
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.1e-84 318.2 481 39.1
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.9e-84 317.4 479 39.2
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.9e-84 317.4 481 39.1
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.9e-84 317.4 474 40.1
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.5e-84 317.0 475 38.5
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 3.3e-84 316.6 477 38.4
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 3.3e-84 316.6 464 40.5
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 5.6e-84 315.8 461 39.5
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 5.6e-84 315.8 470 39.4
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 7.4e-84 315.5 461 38.4
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 7.4e-84 315.5 473 38.9
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 9.6e-84 315.1 466 39.3
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.3e-83 314.7 465 39.6
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.1e-82 311.6 481 39.1
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-82 311.2 461 38.0
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.4e-82 311.2 476 38.4
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.4e-82 311.2 479 38.4
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.8e-82 310.8 461 38.8
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.8e-82 310.8 472 39.4
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.8e-82 310.8 476 39.7
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.8e-82 310.8 483 38.5
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 3.1e-82 310.1 480 38.3
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 3.1e-82 310.1 472 38.6
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.1e-82 310.1 473 38.5
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.1e-82 310.1 477 38.4
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 5.3e-82 309.3 491 38.3
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.9e-82 308.9 477 38.4
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.5e-81 307.8 479 37.6
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.5e-81 306.2 469 38.2
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 4.5e-81 306.2 475 38.1
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 4.5e-81 306.2 466 39.9
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.8e-81 305.8 492 38.0
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 9.9e-81 305.1 479 39.5
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 9.9e-81 305.1 477 38.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 9.9e-81 305.1 484 37.2
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.3e-80 304.7 477 39.0
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.7e-80 304.3 455 40.0
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.2e-80 303.9 458 38.9
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 2.2e-80 303.9 475 37.5
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 2.9e-80 303.5 480 39.0
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 3.8e-80 303.1 472 37.1
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.8e-80 303.1 473 38.5
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 3.8e-80 303.1 486 37.4
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.9e-80 302.8 468 37.6
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 4.9e-80 302.8 470 37.7
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 6.4e-80 302.4 486 37.0
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 6.4e-80 302.4 448 38.8
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 6.4e-80 302.4 478 37.7
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 8.4e-80 302.0 475 37.7
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.9e-79 300.8 473 38.5
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.9e-79 300.8 501 36.7
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.4e-79 300.4 473 38.1
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.2e-79 299.7 479 38.4
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 4.2e-79 299.7 474 36.3
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 4.2e-79 299.7 480 37.5
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 5.5e-79 299.3 464 38.4
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 5.5e-79 299.3 470 39.4
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 7.1e-79 298.9 471 38.0
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 7.1e-79 298.9 492 36.2
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 9.3e-79 298.5 487 37.0
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.2e-78 298.1 470 37.9
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.2e-78 298.1 479 38.8
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.6e-78 297.7 526 36.1
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.7e-78 297.0 469 39.2
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 2.7e-78 297.0 476 37.8
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.6e-78 296.2 476 37.4
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 6.0e-78 295.8 473 38.1
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 7.9e-78 295.4 476 37.2
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.0e-77 295.0 469 37.7
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.8e-77 294.3 487 37.2
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.8e-77 294.3 487 37.2
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.3e-77 293.9 489 36.8
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 3.0e-77 293.5 492 36.8
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.0e-77 293.5 465 38.3
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.0e-77 293.5 480 37.1
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 3.9e-77 293.1 465 37.6
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.1e-76 291.6 480 37.7
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.5e-76 291.2 479 38.2
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.9e-76 290.8 433 37.6
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.9e-76 290.8 468 38.0
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 3.3e-76 290.0 479 39.0
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 9.6e-76 288.5 476 37.2
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.8e-75 287.0 505 35.8
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.4e-74 284.6 509 36.3
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.4e-74 284.6 474 36.5
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.4e-74 284.6 488 37.5
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 6.9e-74 282.3 490 36.5
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.2e-73 281.6 478 36.8
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.6e-73 280.4 484 36.2
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.4e-73 280.0 448 37.7
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.4e-73 280.0 491 37.1
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 3.4e-73 280.0 491 37.1
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.9e-72 276.2 454 36.6
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.9e-71 274.2 463 37.6
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.7e-70 270.4 464 35.8
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 3.3e-68 263.5 488 35.7
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 9.6e-68 261.9 471 35.5
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.8e-67 260.4 477 35.2
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.4e-66 257.3 495 35.2
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 2.6e-65 253.8 480 35.2
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 5.9e-65 252.7 470 36.2
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.4e-63 248.1 557 32.0
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.2e-62 245.0 390 39.0
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.3e-61 241.5 398 37.4
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.3e-59 235.0 466 34.3
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.8e-59 233.8 401 36.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 6.3e-59 232.6 485 33.6
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.8e-58 231.1 437 34.1
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.3e-56 224.9 334 41.0
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.5e-55 220.7 478 32.0
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.2e-55 219.9 332 39.5
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.9e-53 213.4 394 34.5
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.6e-52 210.7 340 39.1
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 7.4e-52 209.1 388 35.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.6e-49 200.7 385 35.1
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.5e-47 194.1 366 35.2
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.5e-44 184.9 350 36.0
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.3e-40 171.8 278 38.8
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.2e-39 166.8 409 30.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.5e-39 166.4 279 35.8
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 8.8e-37 159.1 552 25.9
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 2.0e-36 157.9 280 36.1
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-34 151.8 273 36.6
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.4e-34 151.0 288 36.5
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.7e-33 146.0 173 45.1
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.2e-31 139.4 178 41.0
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.8e-29 134.8 188 38.3
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.7e-24 118.2 238 35.7
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 1.6e-22 111.7 241 32.0
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.8e-21 108.2 124 42.7
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 8.3e-19 99.4 157 35.7
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.1e-18 99.0 92 52.2
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.8e-18 98.2 124 41.1
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 6.6e-16 89.7 136 35.3
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.7e-14 83.6 73 50.7
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 4.7e-14 83.6 73 50.7
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.5e-12 78.6 152 31.6
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.3e-11 75.5 256 28.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-11 75.5 99 40.4
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-11 75.5 99 40.4
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 3.7e-11 73.9 149 32.9
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 1.1e-10 72.4 203 30.5
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 5.9e-09 66.6 157 28.7


User provided reference genes

Program Settings