Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025567 Carpinus fangiana HOM05D003389 ORTHO05D003917 0.0e+00 1378.6 789 100.0
RcHm_v2.0_Chr1g0379891 Rosa chinensis HOM05D003389 ORTHO05D003917 1.9e-20 105.5 379 25.9
PRCOL_00006333 Prasinoderma coloniale HOM05D003389 ORTHO05D003917 6.6e-18 97.1 356 27.5
Eucgr.D01936 Eucalyptus grandis HOM05D003389 ORTHO05D003917 1.1e-17 96.3 267 27.7
Carub.0007s1831 Capsella rubella HOM05D003389 ORTHO05D003917 3.3e-17 94.7 334 26.0
HanXRQChr02g0043491 Helianthus annuus HOM05D003389 ORTHO05D003917 1.3e-16 92.8 328 28.0
Os06g0721600 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 3.8e-13 81.3 261 26.8
Os06g0723400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D020930 8.4e-13 80.1 261 26.4
Migut.A00906 Erythranthe guttata HOM05D003389 ORTHO05D003917 2.4e-12 78.6 173 31.8
Eucgr.D01937 Eucalyptus grandis HOM05D003389 ORTHO05D003917 3.2e-12 78.2 310 26.8
BcaB01g01683 Brassica carinata HOM05D003389 ORTHO05D003917 4.6e-11 74.3 213 28.6
HPP92_022000 Vanilla planifolia HOM05D003389 ORTHO05D003917 1.3e-10 72.8 134 32.8
SMO367G0360 Selaginella moellendorffii HOM05D003389 ORTHO05D003917 1.7e-10 72.4 88 43.2
CiPaw.11G142600 Carya illinoinensis HOM05D003389 ORTHO05D003917 5.1e-10 70.9 158 32.3
Gohir.A11G021100 Gossypium hirsutum HOM05D003389 ORTHO05D003917 5.1e-10 70.9 221 28.5
Oeu001902.1 Olea europaea HOM05D003389 ORTHO05D003917 5.1e-10 70.9 133 31.6
unitig_699.g19759 Utricularia gibba HOM05D003389 ORTHO05D003917 5.1e-10 70.9 146 31.5
A01p14230 Brassica napus HOM05D003389 ORTHO05D003917 6.6e-10 70.5 187 30.5
Gorai.007G022100 Gossypium raimondii HOM05D003389 ORTHO05D003917 6.6e-10 70.5 221 28.1
VMungo1215G1985 Vigna mungo HOM05D003389 ORTHO05D003917 6.6e-10 70.5 125 33.6
BraA01t01370Z Brassica rapa HOM05D003389 ORTHO05D003917 8.7e-10 70.1 187 30.5
Thhalv10027519m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 8.7e-10 70.1 197 29.4
Lj2C200G2 Lonicera japonica HOM05D003389 ORTHO05D003917 8.7e-10 70.1 134 30.6
Mapoly0108s0010 Marchantia polymorpha HOM05D003389 ORTHO05D003917 1.1e-09 69.7 86 39.5
Gorai.004G206500 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.5e-09 69.3 106 34.9
HanXRQChr11g0336621 Helianthus annuus HOM05D003389 ORTHO05D003917 1.5e-09 69.3 200 28.0
Pp3c12_2860 Physcomitrium patens HOM05D003389 ORTHO05D003917 1.5e-09 69.3 153 32.7
CiPaw.12G100200 Carya illinoinensis HOM05D003389 ORTHO05D003917 1.9e-09 68.9 181 28.7
Cre06.g304850 Chlamydomonas reinhardtii HOM05D003389 ORTHO05D003917 1.9e-09 68.9 90 40.0
DCAR_006771 Daucus carota HOM05D000526 ORTHO05D003917 1.9e-09 68.9 128 32.0
Ah.12g057800 Amaranthus hybridus HOM05D003389 ORTHO05D003917 2.5e-09 68.6 176 29.5
Cfa012079 Carpinus fangiana HOM05D003389 ORTHO05D003917 2.5e-09 68.6 146 31.5
Glyma.11G027200 Glycine max HOM05D003389 ORTHO05D003917 2.5e-09 68.6 125 32.8
Gohir.A08G177400 Gossypium hirsutum HOM05D003389 ORTHO05D003917 2.5e-09 68.6 106 34.9
Sabra03G0084000 Salix brachista HOM05D003389 ORTHO05D003917 2.5e-09 68.6 172 30.2
THA.LOC104814202 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 2.5e-09 68.6 231 28.1
EL10Ac5g12710 Beta vulgaris HOM05D003389 ORTHO05D003917 3.3e-09 68.2 172 30.8
Gohir.D08G195800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 3.3e-09 68.2 106 34.0
Gohir.D11G020800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 3.3e-09 68.2 125 31.2
PSO478G1498 Papaver somniferum HOM05D003389 ORTHO05D003917 3.3e-09 68.2 188 31.4
Sp7g21050 Schrenkiella parvula HOM05D003389 ORTHO05D003917 3.3e-09 68.2 332 23.5
TAR636G1874 Trochodendron aralioides HOM05D003389 ORTHO05D003917 3.3e-09 68.2 112 34.8
Duzib068G0926 Durio zibethinus HOM05D003389 ORTHO05D003917 4.3e-09 67.8 116 31.9
Lalb_Chr09g0324691 Lupinus albus HOM05D003389 ORTHO05D003917 4.3e-09 67.8 105 35.2
Psat2g181120 Pisum sativum HOM05D003389 ORTHO05D003917 4.3e-09 67.8 181 29.8
TWI15G1193 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 4.3e-09 67.8 105 34.3
AL7G30560 Arabidopsis lyrata HOM05D003389 ORTHO05D003917 5.6e-09 67.4 124 33.9
arahy.Tifrunner.gnm1.ann1.18T4MA Arachis hypogaea HOM05D003389 ORTHO05D003917 5.6e-09 67.4 122 32.0
arahy.Tifrunner.gnm1.ann1.HGX6IC Arachis hypogaea HOM05D003389 ORTHO05D003917 5.6e-09 67.4 122 32.0
CBR_g38139 Chara braunii HOM05D003389 ORTHO05D003917 5.6e-09 67.4 115 35.7
Dinv37703 Davidia involucrata HOM05D003389 ORTHO05D003917 5.6e-09 67.4 158 28.5
Lalb_Chr05g0214741 Lupinus albus HOM05D003389 ORTHO05D003917 5.6e-09 67.4 168 29.8
PSO782G1906 Papaver somniferum HOM05D003389 ORTHO05D003917 5.6e-09 67.4 185 31.9
Phvul.002G153200 Phaseolus vulgaris HOM05D003389 ORTHO05D003917 5.6e-09 67.4 105 36.2
Thecc.03G268500 Theobroma cacao HOM05D003389 ORTHO05D003917 5.6e-09 67.4 116 31.9
TPR.G19581 Trifolium pratense HOM05D003389 ORTHO05D003917 5.6e-09 67.4 121 33.9
Aa31LG9G10590 Aethionema arabicum HOM05D003389 ORTHO05D003917 7.3e-09 67.0 220 26.8
AT4G11860 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 7.3e-09 67.0 222 26.6
COL.COLO4_23793 Corchorus olitorius HOM05D003389 ORTHO05D003917 7.3e-09 67.0 116 31.9
Migut.E01161 Erythranthe guttata HOM05D003389 ORTHO05D003917 7.3e-09 67.0 273 26.0
Lj2g0004762 Lotus japonicus HOM05D003389 ORTHO05D003917 7.3e-09 67.0 160 31.2
Pp3c17_3230 Physcomitrium patens HOM05D003389 ORTHO05D003917 7.3e-09 67.0 85 43.5
Rhsim11G0008000 Rhododendron simsii HOM05D003389 ORTHO05D003917 7.3e-09 67.0 104 33.7
Hund11535 Selenicereus undatus HOM05D003389 ORTHO05D003917 7.3e-09 67.0 150 34.0
vmacro00214 Vaccinium macrocarpon HOM05D003389 ORTHO05D003917 7.3e-09 67.0 86 38.4
C01p17500 Brassica napus HOM05D003389 ORTHO05D003917 9.6e-09 66.6 336 25.6
CARHR254440 Cardamine hirsuta HOM05D003389 ORTHO05D003917 9.6e-09 66.6 173 29.5
CDE04G0877 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 9.6e-09 66.6 135 31.9
Lsat_1_v5_gn_6_10400 Lactuca sativa HOM05D003389 ORTHO05D003917 9.6e-09 66.6 86 38.4
Nitab4.5_0008362g0010 Nicotiana tabacum HOM05D003389 ORTHO05D003917 9.6e-09 66.6 176 28.4
Potri.003G119800 Populus trichocarpa HOM05D003389 ORTHO05D003917 9.6e-09 66.6 171 29.8
SalBow6G3358 Salvia bowleyana HOM05D003389 ORTHO05D003917 9.6e-09 66.6 174 31.0
Sed0023838 Sechium edule HOM05D003389 ORTHO05D003917 9.6e-09 66.6 130 30.8
SGA_v2.0_scaffold286G47125 Striga asiatica HOM05D003389 ORTHO05D003917 9.6e-09 66.6 219 27.4
THA.LOC104806361 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 9.6e-09 66.6 177 28.8
BcaC04g21168 Brassica carinata HOM05D003389 ORTHO05D003917 1.3e-08 66.2 187 27.3
C09p34580 Brassica napus HOM05D003389 ORTHO05D003917 1.3e-08 66.2 187 27.3
BolC9t56305H Brassica oleracea HOM05D003389 ORTHO05D003917 1.3e-08 66.2 187 27.3
CSS0021110 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 1.3e-08 66.2 179 29.6
Ciclev10019075m.g Citrus clementina HOM05D003389 ORTHO05D003917 1.3e-08 66.2 123 31.7
FvH4_5g01250 Fragaria vesca HOM05D003389 ORTHO05D003917 1.3e-08 66.2 171 30.4
Glyma.01G214700 Glycine max HOM05D003389 ORTHO05D003917 1.3e-08 66.2 116 33.6
Manes.02G030300 Manihot esculenta HOM05D003389 ORTHO05D003917 1.3e-08 66.2 176 30.1
Potri.001G112300 Populus trichocarpa HOM05D003389 ORTHO05D003917 1.3e-08 66.2 172 29.7
Sed0009929 Sechium edule HOM05D003389 ORTHO05D003917 1.3e-08 66.2 187 28.3
CANSAT21G1884 Cannabis sativa HOM05D003389 ORTHO05D003917 1.6e-08 65.9 167 29.9
AUR62017315 Chenopodium quinoa HOM05D003389 ORTHO05D003917 1.6e-08 65.9 146 31.5
Thhalv10028490m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 1.6e-08 65.9 227 26.4
FAN18G0817 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.6e-08 65.9 171 32.2
Nn1g01292 Nelumbo nucifera HOM05D003389 ORTHO05D003917 1.6e-08 65.9 108 34.3
Nn6g34315 Nelumbo nucifera HOM05D003389 ORTHO05D003917 1.6e-08 65.9 96 34.4
Sc07g0009480 Simmondsia chinensis HOM05D003389 ORTHO05D003917 1.6e-08 65.9 99 35.4
Zm00001eb272510 Zea mays HOM05D003389 ORTHO05D003917 1.6e-08 65.9 101 34.7
AUR62010575 Chenopodium quinoa HOM05D003389 ORTHO05D003917 2.1e-08 65.5 146 31.5
DCAR_008431 Daucus carota HOM05D003389 ORTHO05D003917 2.1e-08 65.5 128 31.2
Duzib205G0992 Durio zibethinus HOM05D003389 ORTHO05D003917 2.1e-08 65.5 97 36.1
FAN04G3242 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.1e-08 65.5 179 29.1
FAN08G2451 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.1e-08 65.5 179 29.1
FAN09G1540 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.1e-08 65.5 152 32.2
FAN13G0159 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.1e-08 65.5 179 29.1
Lj8A241G19 Lonicera japonica HOM05D003389 ORTHO05D003917 2.1e-08 65.5 100 35.0
Medtr5g011090 Medicago truncatula HOM05D003389 ORTHO05D003917 2.1e-08 65.5 128 31.2
SalBow1G6995 Salvia bowleyana HOM05D003262 ORTHO05D003917 2.1e-08 65.5 169 29.6
Aqoxy5G03952 Aquilegia oxysepala HOM05D003389 ORTHO05D003917 2.8e-08 65.1 185 32.4
CSS0044016 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 2.8e-08 65.1 98 34.7
CsaV3_5G003350 Cucumis sativus L. HOM05D003389 ORTHO05D003917 2.8e-08 65.1 124 30.6
MD04G1069900 Malus domestica HOM05D003389 ORTHO05D003917 2.8e-08 65.1 128 32.8
MD06G1071200 Malus domestica HOM05D003389 ORTHO05D003917 2.8e-08 65.1 142 32.4
GSVIVG01019881001 Vitis vinifera HOM05D003389 ORTHO05D003917 2.8e-08 65.1 156 26.9
Carub.0006s3095 Capsella rubella HOM05D003389 ORTHO05D003917 3.6e-08 64.7 133 30.1
MD06G1071400 Malus domestica HOM05D003389 ORTHO05D003917 3.6e-08 64.7 128 32.8
Prupe.5G088000 Prunus persica HOM05D003389 ORTHO05D003917 3.6e-08 64.7 172 30.2
RcHm_v2.0_Chr7g0199771 Rosa chinensis HOM05D003389 ORTHO05D003917 3.6e-08 64.7 114 34.2
SEGI_34401 Sequoiadendron giganteum HOM05D003389 ORTHO05D003917 3.6e-08 64.7 111 34.2
Actinidia14499 Actinidia chinensis HOM05D003389 ORTHO05D003917 4.8e-08 64.3 127 30.7
BcaNung01008 Brassica carinata HOM05D003389 ORTHO05D003917 4.8e-08 64.3 175 29.1
A09p27250 Brassica napus HOM05D003389 ORTHO05D003917 4.8e-08 64.3 220 28.6
BraA09t38293Z Brassica rapa HOM05D003389 ORTHO05D003917 4.8e-08 64.3 216 26.9
Gorai.006G210500 Gossypium raimondii HOM05D003389 ORTHO05D003917 4.8e-08 64.3 181 29.8
TAR636G0614 Trochodendron aralioides HOM05D003389 ORTHO05D003917 4.8e-08 64.3 94 35.1
Atru.chr9.1507 Acer truncatum HOM05D003389 ORTHO05D003917 6.2e-08 63.9 183 29.5
BcaC09g51049 Brassica carinata HOM05D003389 ORTHO05D003917 6.2e-08 63.9 336 24.1
Ca_06667_v3 Cicer arietinum L. HOM05D003389 ORTHO05D003917 6.2e-08 63.9 146 30.1
MELO3C005619.2 Cucumis melo HOM05D003389 ORTHO05D003917 6.2e-08 63.9 75 41.3
ECA233G2019 Erigeron canadensis HOM05D003389 ORTHO05D003917 6.2e-08 63.9 181 28.7
Gohir.D09G187700 Gossypium hirsutum HOM05D003389 ORTHO05D003917 6.2e-08 63.9 181 29.8
Hma1.2p1_0138F.1_g062730 Hydrangea macrophylla HOM05D003389 ORTHO05D003917 6.2e-08 63.9 102 35.3
MD04G1069800 Malus domestica HOM05D003389 ORTHO05D003917 6.2e-08 63.9 86 38.4
Manes.01G069600 Manihot esculenta HOM05D003389 ORTHO05D003917 6.2e-08 63.9 146 30.8
Nitab4.5_0001714g0090 Nicotiana tabacum HOM05D003389 ORTHO05D003917 6.2e-08 63.9 86 36.0
Peaxi162Scf00620g00617 Petunia axillaris HOM05D003389 ORTHO05D003917 6.2e-08 63.9 181 29.3
QL12p016621 Quercus lobata HOM05D003389 ORTHO05D003917 6.2e-08 63.9 116 30.2
Sabra01G0085800 Salix brachista HOM05D003389 ORTHO05D003917 6.2e-08 63.9 151 31.8
TAR636G1472 Trochodendron aralioides HOM05D003389 ORTHO05D003917 6.2e-08 63.9 136 33.1
ATR0661G488 Amborella trichopoda HOM05D003389 ORTHO05D003917 8.1e-08 63.5 75 41.3
Gohir.A09G193500 Gossypium hirsutum HOM05D003389 ORTHO05D003917 8.1e-08 63.5 173 29.5
Hund14708 Selenicereus undatus HOM05D003389 ORTHO05D003917 8.1e-08 63.5 144 31.2
Sopen08g028470 Solanum pennellii HOM05D003389 ORTHO05D003917 8.1e-08 63.5 205 25.4
CAN.G981.56 Capsicum annuum HOM05D003389 ORTHO05D003917 1.1e-07 63.2 133 30.1
FAN09G4798 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.1e-07 63.2 114 35.1
Lsat_1_v5_gn_6_79100 Lactuca sativa HOM05D003389 ORTHO05D003917 1.1e-07 63.2 204 27.9
TWI81G0612 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 1.1e-07 63.2 121 32.2
ClCG01G003270 Citrullus lanatus HOM05D003389 ORTHO05D003917 1.4e-07 62.8 75 40.0
ECA240G1577 Erigeron canadensis HOM05D003389 ORTHO05D003917 1.4e-07 62.8 86 36.0
MBI11_g05095_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 1.4e-07 62.8 87 37.9
Sp6g05610 Schrenkiella parvula HOM05D003389 ORTHO05D003917 1.4e-07 62.8 136 32.4
PGSC0003DMG400022735 Solanum tuberosum HOM05D003389 ORTHO05D003917 1.4e-07 62.8 205 25.9
SGA_v2.0_scaffold144G35980 Striga asiatica HOM05D003389 ORTHO05D003917 1.4e-07 62.8 75 40.0
Cpa.g.sc29.32 Carica papaya HOM05D003389 ORTHO05D003917 1.8e-07 62.4 116 32.8
Duzib084G0706 Durio zibethinus HOM05D003389 ORTHO05D003917 1.8e-07 62.4 116 31.0
Eucgr.D01938 Eucalyptus grandis HOM05D003389 ORTHO05D003917 1.8e-07 62.4 75 38.7
AT4G22960 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 2.4e-07 62.0 94 38.3
SHI13491 Sapria himalayana HOM05D003389 ORTHO05D003917 2.4e-07 62.0 175 28.6
Zm00001eb227790 Zea mays HOM05D003389 ORTHO05D003917 2.4e-07 62.0 146 30.1
BolC1t01690H Brassica oleracea HOM05D003389 ORTHO05D003917 3.1e-07 61.6 339 23.9
Cc08_g13790 Coffea canephora HOM05D003389 ORTHO05D003917 3.1e-07 61.6 172 27.9
PSO170G2389 Papaver somniferum HOM05D003389 ORTHO05D003917 3.1e-07 61.6 130 32.3
PGR031G2775 Punica granatum HOM05D003389 ORTHO05D003917 3.1e-07 61.6 129 31.8
CDE12G0302 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 4.0e-07 61.2 176 29.0
Os06g0712400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D003917 4.0e-07 61.2 177 27.7
Cpa.g.sc29.33 Carica papaya HOM05D003389 ORTHO05D003917 5.3e-07 60.8 169 26.0
Actinidia05234 Actinidia chinensis HOM05D003389 ORTHO05D003917 6.9e-07 60.5 127 29.9
AagrBONN_evm.TU.Sc2ySwM_228.3893 Anthoceros agrestis HOM05D003389 ORTHO05D003917 9.0e-07 60.1 136 32.4
PSO302G0081 Papaver somniferum HOM05D003389 ORTHO05D003917 1.2e-06 59.7 130 32.3
MBI04_g06622_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 2.0e-06 58.9 86 38.4
Dinv39033 Davidia involucrata HOM05D003389 ORTHO05D003917 3.4e-06 58.2 172 27.9
MCO06G239 Micromonas commoda HOM05D003389 ORTHO05D003917 9.9e-06 56.6 150 30.7


User provided reference genes

Program Settings