Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 0.0e+00 1795.8 942 100.0
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 3.5e-151 540.0 853 41.4
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 2.2e-23 115.5 506 25.9
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 3.1e-22 111.7 511 25.0
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 5.3e-22 110.9 506 25.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.2e-21 109.8 512 25.2
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.2e-21 109.8 497 23.9
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.5e-21 109.4 512 25.2
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.5e-21 109.4 496 23.8
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.5e-21 109.4 496 24.4
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.0e-21 109.0 505 23.8
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 4.5e-21 107.8 471 26.1
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 7.7e-21 107.1 505 24.6
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 7.7e-21 107.1 520 23.5
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.3e-20 106.3 506 23.5
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.7e-20 105.9 508 25.2
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.2e-20 105.5 505 24.4
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.2e-20 105.5 505 23.6
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.2e-20 105.5 490 24.3
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.9e-20 105.1 451 27.1
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.9e-20 105.1 492 24.2
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.8e-20 104.8 497 23.9
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 5.0e-20 104.4 511 24.5
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 6.5e-20 104.0 506 23.9
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 6.5e-20 104.0 505 24.8
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 8.5e-20 103.6 471 24.4
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-19 103.2 505 24.8
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.9e-19 102.4 511 24.3
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.9e-19 102.4 498 24.5
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 2.5e-19 102.1 469 24.7
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.5e-19 102.1 498 24.5
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.5e-19 102.1 492 24.2
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.2e-19 101.7 495 24.6
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 3.2e-19 101.7 489 23.9
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 4.2e-19 101.3 469 24.5
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 4.2e-19 101.3 469 24.5
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 4.2e-19 101.3 469 24.5
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 4.2e-19 101.3 502 24.1
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 5.5e-19 100.9 503 22.7
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 5.5e-19 100.9 489 23.9
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 5.5e-19 100.9 498 24.5
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 7.2e-19 100.5 469 24.3
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 7.2e-19 100.5 501 23.2
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 7.2e-19 100.5 506 25.1
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 9.4e-19 100.1 503 24.1
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 9.4e-19 100.1 470 24.0
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.2e-18 99.8 511 23.5
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.2e-18 99.8 505 23.8
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.2e-18 99.8 505 23.2
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-18 99.4 506 24.3
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 3.6e-18 98.2 471 23.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 3.6e-18 98.2 499 24.0
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 4.6e-18 97.8 471 24.6
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 7.9e-18 97.1 495 23.2
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.0e-17 96.7 489 23.1
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.4e-17 96.3 492 23.4
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.8e-17 95.9 467 23.3
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.8e-17 95.9 508 23.8
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.8e-17 95.9 498 24.5
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.3e-17 95.5 500 23.8
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.3e-17 95.5 478 25.3
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 2.3e-17 95.5 491 24.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.1e-17 94.4 504 24.6
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 5.1e-17 94.4 516 24.6
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 6.7e-17 94.0 490 22.7
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 8.8e-17 93.6 501 25.1
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.1e-16 93.2 486 24.7
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.1e-16 93.2 494 22.5
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.5e-16 92.8 500 23.2
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.5e-16 92.8 503 24.9
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 2.0e-16 92.4 462 24.5
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.5e-16 92.0 500 24.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.3e-16 91.7 502 23.1
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 5.7e-16 90.9 490 24.3
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 5.7e-16 90.9 531 22.4
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 5.7e-16 90.9 505 24.0
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 7.4e-16 90.5 493 22.9
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 7.4e-16 90.5 491 23.8
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.7e-16 90.1 504 23.8
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 9.7e-16 90.1 475 24.4
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.3e-15 89.7 493 22.7
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.3e-15 89.7 467 24.2
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.7e-15 89.4 492 22.8
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 2.2e-15 89.0 493 22.7
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 2.2e-15 89.0 493 22.7
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 2.2e-15 89.0 492 22.8
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.2e-15 89.0 470 23.2
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 2.2e-15 89.0 468 22.9
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.2e-15 89.0 475 24.2
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 2.8e-15 88.6 493 22.9
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.8e-15 88.6 495 23.2
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.7e-15 88.2 460 26.7
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 6.3e-15 87.4 504 23.6
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 6.3e-15 87.4 474 23.6
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 8.2e-15 87.0 498 23.3
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.1e-14 86.7 475 24.2
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.4e-14 86.3 497 22.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.8e-14 85.9 475 24.4
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 2.4e-14 85.5 494 22.7
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.4e-14 85.5 494 22.7
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 3.1e-14 85.1 494 22.7
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 3.1e-14 85.1 494 22.7
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 4.1e-14 84.7 494 22.7
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.1e-14 84.7 507 23.7
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 4.1e-14 84.7 521 21.9
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 5.3e-14 84.3 491 22.8
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 9.1e-14 83.6 387 23.3
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.2e-13 83.2 505 23.4
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.2e-13 83.2 502 24.5
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.0e-13 82.4 505 23.0
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 3.4e-13 81.6 493 22.7
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 4.5e-13 81.3 460 23.3
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.0e-12 80.1 473 24.9
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.3e-12 79.7 254 27.2
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.3e-12 79.7 505 23.2
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-12 79.7 397 24.4
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.7e-12 79.3 429 25.2
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.8e-12 78.2 368 24.5
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 3.8e-12 78.2 486 23.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.8e-12 78.2 419 24.1
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.1e-11 76.6 381 23.1
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.5e-11 75.5 555 24.7
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.7e-10 72.0 502 22.9
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 7.9e-10 70.5 368 23.1
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.0e-09 68.6 220 26.4
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 3.0e-09 68.6 468 21.6
Psat2g116160 Pisum sativum HOM05D000508 ORTHO05D000371 5.1e-09 67.8 328 23.2
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 5.1e-09 67.8 489 21.3
Nitab4.5_0006113g0020 Nicotiana tabacum HOM05D000508 ORTHO05D000371 1.8e-06 59.3 308 23.4
SGA_v2.0_scaffold455G51900 Striga asiatica HOM05D000508 ORTHO05D000371 3.1e-06 58.5 332 24.7
Ca_04832_v3 Cicer arietinum L. HOM05D000508 ORTHO05D000371 4.1e-06 58.2 337 21.1


User provided reference genes

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