Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 6.5e-131 470.7 231 100.0
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 3.5e-20 102.8 242 33.9
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 7.9e-20 101.7 183 38.3
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 3.0e-19 99.8 197 35.5
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 5.8e-15 85.5 204 33.3
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 7.6e-15 85.1 193 35.2
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 7.6e-15 85.1 192 35.4
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 1.3e-14 84.3 219 34.7
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 1.3e-14 84.3 219 34.2
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.7e-14 84.0 198 35.4
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 2.2e-14 83.6 193 35.2
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.2e-14 83.6 198 34.8
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 2.2e-14 83.6 195 34.4
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 3.8e-14 82.8 198 34.8
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 4.9e-14 82.4 195 35.9
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 6.5e-14 82.0 191 35.1
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 8.4e-14 81.6 198 34.8
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 8.4e-14 81.6 193 34.7
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 8.4e-14 81.6 212 33.0
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 1.1e-13 81.3 194 34.0
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 1.1e-13 81.3 218 33.9
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.1e-13 81.3 199 34.2
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 1.4e-13 80.9 192 34.4
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 1.4e-13 80.9 229 32.8
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.4e-13 80.9 203 33.5
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 1.4e-13 80.9 197 34.0
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 1.9e-13 80.5 196 34.7
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 2.5e-13 80.1 198 34.8
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.5e-13 80.1 198 34.8
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 2.5e-13 80.1 195 33.3
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.2e-13 79.7 198 34.8
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 3.2e-13 79.7 214 32.7
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 3.2e-13 79.7 204 33.8
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 4.2e-13 79.3 195 34.4
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 4.2e-13 79.3 209 33.0
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 4.2e-13 79.3 198 32.3
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 5.5e-13 79.0 195 33.8
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 7.1e-13 78.6 222 32.0
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 7.1e-13 78.6 222 32.0
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 7.1e-13 78.6 196 33.2
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 9.3e-13 78.2 195 32.8
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 9.3e-13 78.2 195 34.9
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.2e-12 77.8 198 33.3
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 1.2e-12 77.8 196 33.7
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 1.2e-12 77.8 193 34.2
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.6e-12 77.4 195 32.8
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.6e-12 77.4 198 34.3
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 2.1e-12 77.0 195 33.8
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 2.1e-12 77.0 192 32.3
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 2.1e-12 77.0 217 32.7
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.1e-12 77.0 222 31.5
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 2.1e-12 77.0 190 34.2
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.7e-12 76.6 211 32.7
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 3.5e-12 76.3 199 34.2
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 4.6e-12 75.9 194 33.5
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 4.6e-12 75.9 192 33.9
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 6.0e-12 75.5 201 32.8
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 6.0e-12 75.5 196 34.7
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 6.0e-12 75.5 195 33.8
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 6.0e-12 75.5 161 36.0
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 7.9e-12 75.1 171 33.9
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 7.9e-12 75.1 196 34.2
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 7.9e-12 75.1 177 33.3
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.0e-11 74.7 205 30.7
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 1.0e-11 74.7 195 33.3
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.0e-11 74.7 199 33.2
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.3e-11 74.3 196 33.7
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 1.3e-11 74.3 193 32.6
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 1.3e-11 74.3 203 33.5
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 1.8e-11 73.9 191 33.0
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 1.8e-11 73.9 200 32.0
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.8e-11 73.9 230 30.4
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 2.3e-11 73.6 192 31.2
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 2.3e-11 73.6 198 32.8
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 2.3e-11 73.6 208 30.3
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.3e-11 73.6 176 33.5
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 3.0e-11 73.2 150 34.7
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 3.9e-11 72.8 195 32.3
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 5.1e-11 72.4 219 31.5
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 5.1e-11 72.4 170 34.7
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 5.1e-11 72.4 212 30.7
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 6.7e-11 72.0 176 33.5
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 6.7e-11 72.0 195 31.3
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 6.7e-11 72.0 192 31.2
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 8.7e-11 71.6 189 32.3
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 8.7e-11 71.6 190 31.6
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 8.7e-11 71.6 176 34.7
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 1.1e-10 71.2 114 40.4
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.1e-10 71.2 210 33.3
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.1e-10 71.2 210 33.3
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.1e-10 71.2 159 34.0
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 1.1e-10 71.2 174 33.3
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 1.1e-10 71.2 114 42.1
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 1.5e-10 70.9 170 31.2
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 1.5e-10 70.9 172 35.5
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 1.5e-10 70.9 157 33.8
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 1.9e-10 70.5 177 31.6
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.9e-10 70.5 171 32.2
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.9e-10 70.5 174 33.3
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.5e-10 70.1 173 32.4
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 2.5e-10 70.1 197 30.5
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 2.5e-10 70.1 197 30.5
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 3.3e-10 69.7 199 30.7
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 3.3e-10 69.7 140 36.4
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 3.3e-10 69.7 159 34.6
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 3.3e-10 69.7 114 40.4
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 3.3e-10 69.7 160 33.1
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 3.3e-10 69.7 160 33.1
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 3.3e-10 69.7 162 35.2
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 4.3e-10 69.3 170 30.6
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 4.3e-10 69.3 175 32.0
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 4.3e-10 69.3 175 32.0
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 4.3e-10 69.3 129 38.0
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 5.7e-10 68.9 197 29.4
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 9.7e-10 68.2 159 33.3
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 9.7e-10 68.2 173 31.8
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 1.3e-09 67.8 140 32.9
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 1.6e-09 67.4 170 30.6
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 2.2e-09 67.0 114 38.6
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 2.8e-09 66.6 155 34.8
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 4.8e-09 65.9 114 38.6
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 1.1e-08 64.7 155 33.5
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.1e-08 64.7 164 32.3
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 1.4e-08 64.3 155 33.5
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 1.4e-08 64.3 114 38.6
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 6.9e-08 62.0 158 32.3
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 2.6e-07 60.1 170 32.4
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.3e-06 57.8 114 37.7


User provided reference genes

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