Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 0.0e+00 1194.1 582 100.0
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 1.1e-97 361.7 415 44.3
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.6e-96 357.1 408 43.9
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 4.5e-96 356.3 428 43.5
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.2e-95 354.0 412 43.0
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 2.2e-95 354.0 412 43.0
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 8.4e-95 352.1 412 43.2
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.9e-94 350.9 412 44.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.9e-94 350.9 412 44.7
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 3.2e-94 350.1 416 42.1
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 4.2e-94 349.7 412 44.4
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 5.5e-94 349.4 411 42.6
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 7.1e-94 349.0 411 43.8
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 9.3e-94 348.6 416 42.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.2e-93 348.2 451 40.4
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.6e-93 347.8 412 45.4
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.7e-93 347.1 418 43.1
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 3.5e-93 346.7 442 43.2
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.5e-93 346.7 435 41.8
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 4.6e-93 346.3 445 42.5
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 4.6e-93 346.3 411 43.1
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.6e-93 346.3 411 43.6
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 6.0e-93 345.9 412 43.9
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 7.9e-93 345.5 452 41.6
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 7.9e-93 345.5 411 42.8
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 1.0e-92 345.1 408 42.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.0e-92 345.1 384 44.0
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.8e-92 344.4 423 41.6
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 2.3e-92 344.0 421 43.2
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 5.1e-92 342.8 411 43.1
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 5.1e-92 342.8 410 42.9
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 8.7e-92 342.0 381 45.1
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 8.7e-92 342.0 408 43.6
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.1e-91 341.7 412 44.2
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.9e-91 340.9 421 42.3
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 4.3e-91 339.7 415 42.4
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 4.3e-91 339.7 396 45.2
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.3e-91 339.7 419 43.4
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 7.4e-91 339.0 414 43.0
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 7.4e-91 339.0 412 42.5
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 9.7e-91 338.6 441 42.0
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 9.7e-91 338.6 415 41.9
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 9.7e-91 338.6 408 43.4
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 9.7e-91 338.6 404 43.8
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.3e-90 338.2 412 42.5
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.3e-90 338.2 357 45.1
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.2e-90 337.4 409 42.1
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.2e-90 337.4 411 41.8
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 2.2e-90 337.4 461 40.8
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 2.2e-90 337.4 438 41.8
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.2e-90 337.4 367 44.4
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.8e-90 337.0 411 41.6
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 2.8e-90 337.0 362 46.7
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 3.7e-90 336.7 464 39.9
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.7e-90 336.7 381 44.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 3.7e-90 336.7 442 41.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 6.3e-90 335.9 418 41.9
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 6.3e-90 335.9 412 42.7
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 6.3e-90 335.9 411 42.6
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-89 335.1 447 38.3
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-89 335.1 411 42.1
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.4e-89 334.7 447 38.3
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-89 334.7 420 42.6
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.4e-89 334.7 381 43.3
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.4e-89 334.7 413 41.2
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.8e-89 334.3 420 42.6
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.1e-89 333.6 412 42.5
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 4.1e-89 333.2 436 42.4
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.3e-89 332.8 447 38.0
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 5.3e-89 332.8 410 42.7
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 5.3e-89 332.8 401 42.1
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.9e-89 332.4 409 42.1
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 9.0e-89 332.0 414 41.5
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 2.0e-88 330.9 403 42.4
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.4e-88 330.1 412 41.7
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 3.4e-88 330.1 408 40.9
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 4.5e-88 329.7 400 42.5
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 5.9e-88 329.3 352 46.6
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.0e-87 328.6 398 43.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.2e-87 327.4 436 41.7
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.9e-87 327.0 367 43.9
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.8e-87 326.6 383 43.6
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.1e-86 325.1 367 43.9
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.1e-86 325.1 367 43.9
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.9e-86 324.3 408 41.4
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.5e-86 323.9 442 40.5
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 3.2e-86 323.6 433 40.6
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 4.2e-86 323.2 450 39.8
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 5.5e-86 322.8 387 42.4
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.6e-85 321.2 411 41.1
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 4.6e-85 319.7 382 41.6
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 2.3e-84 317.4 398 41.0
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 6.7e-84 315.8 462 36.4
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 6.7e-84 315.8 385 41.8
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 8.8e-84 315.5 361 43.8
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.9e-83 314.3 385 41.6
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.9e-83 314.3 424 40.6
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 5.7e-83 312.8 414 40.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 7.4e-83 312.4 391 40.7
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.7e-83 312.0 376 42.6
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.3e-82 311.6 416 40.6
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 2.2e-82 310.8 433 39.0
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-81 308.5 360 42.5
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.4e-81 308.1 393 40.5
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.4e-81 308.1 393 40.5
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.8e-81 307.8 343 43.7
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.8e-81 307.8 405 42.0
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.7e-80 302.4 350 45.1
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.3e-79 301.6 393 41.2
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 3.8e-79 300.1 450 38.2
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.9e-78 297.7 336 44.9
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 2.5e-78 297.4 331 45.9
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 4.7e-77 293.1 336 42.9
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 6.1e-77 292.7 353 42.8
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 2.6e-75 287.3 369 40.1
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.6e-75 287.3 362 43.1
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 8.5e-71 272.3 454 35.0
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 3.6e-69 266.9 397 37.5
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 3.5e-64 250.4 309 42.1
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 5.9e-64 249.6 399 34.3
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.0e-63 248.8 417 35.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-61 241.9 353 35.1
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 8.8e-60 235.7 281 44.8
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 2.0e-56 224.6 346 37.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.5e-54 218.4 236 46.6
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 6.8e-52 209.5 376 35.4
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.0e-51 208.0 254 40.9
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.0e-47 195.7 174 49.4
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 5.0e-47 193.4 359 34.3
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.8e-44 184.9 384 32.0
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.7e-39 168.3 328 32.9
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 4.0e-36 157.1 289 34.6
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.4e-33 147.9 119 54.6
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 4.7e-29 133.7 175 41.7
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 8.3e-26 122.9 206 35.0
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.2e-24 119.0 178 38.2
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 1.6e-24 118.6 202 33.7
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 9.9e-19 99.4 158 35.4
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 4.1e-17 94.0 202 30.7
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 4.3e-14 84.0 88 48.9
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.8e-12 78.6 85 45.9
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.4e-12 78.2 93 43.0
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.1e-12 77.8 145 31.7
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.1e-12 77.8 145 31.7
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 9.9e-11 72.8 47 61.7
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.9e-10 71.2 57 56.1
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 3.5e-08 64.3 71 42.3
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 4.3e-06 57.4 79 41.8


User provided reference genes

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