Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 0.0e+00 1237.2 611 100.0
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 9.9e-62 242.3 669 29.7
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.2e-61 241.1 658 30.4
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.8e-61 240.4 657 30.3
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 8.4e-61 239.2 647 30.0
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 5.4e-60 236.5 615 31.4
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 9.3e-60 235.7 637 30.5
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 9.3e-60 235.7 616 30.0
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.2e-59 235.3 663 30.5
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.6e-59 235.0 652 29.8
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.6e-59 235.0 657 29.5
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 2.1e-59 234.6 648 29.8
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 2.7e-59 234.2 673 30.5
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 2.7e-59 234.2 627 29.8
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 2.7e-59 234.2 611 30.4
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 2.7e-59 234.2 656 29.1
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 3.5e-59 233.8 672 30.5
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 3.5e-59 233.8 635 31.2
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 6.0e-59 233.0 669 30.3
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 6.0e-59 233.0 633 31.1
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.3e-58 231.9 676 29.7
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 1.3e-58 231.9 642 30.8
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 1.7e-58 231.5 665 28.9
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 3.0e-58 230.7 633 28.9
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 3.9e-58 230.3 637 30.5
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 5.1e-58 229.9 649 30.2
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 6.6e-58 229.6 639 30.8
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-57 228.8 670 29.7
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 1.1e-57 228.8 632 30.5
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.5e-57 228.4 614 31.8
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 1.9e-57 228.0 615 30.6
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 3.3e-57 227.3 656 28.2
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 3.3e-57 227.3 594 31.1
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 4.3e-57 226.9 649 29.0
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 9.6e-57 225.7 654 29.1
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 9.6e-57 225.7 645 29.8
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 1.3e-56 225.3 656 28.2
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 1.3e-56 225.3 635 29.0
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.6e-56 224.9 647 30.8
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 1.6e-56 224.9 628 28.8
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 2.1e-56 224.6 643 28.6
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.8e-56 224.2 643 28.8
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 3.6e-56 223.8 641 29.6
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 3.6e-56 223.8 639 30.2
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 4.8e-56 223.4 644 28.9
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 8.1e-56 222.6 638 29.6
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 8.1e-56 222.6 690 29.6
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 1.1e-55 222.2 634 30.0
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.4e-55 221.9 669 30.6
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.4e-55 221.9 682 28.2
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 2.4e-55 221.1 605 28.1
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 3.1e-55 220.7 616 27.9
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 3.1e-55 220.7 671 28.6
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.0e-55 220.3 647 29.4
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 5.3e-55 219.9 646 28.9
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 5.3e-55 219.9 666 29.0
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 6.9e-55 219.5 613 29.2
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 6.9e-55 219.5 646 28.2
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 6.9e-55 219.5 627 28.5
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 9.0e-55 219.2 679 28.9
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 9.0e-55 219.2 652 29.8
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 1.2e-54 218.8 640 28.6
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 1.5e-54 218.4 620 28.9
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.5e-54 218.4 640 30.0
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 1.5e-54 218.4 661 29.8
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 1.5e-54 218.4 666 29.1
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 2.0e-54 218.0 650 29.4
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.0e-54 218.0 617 30.0
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 2.6e-54 217.6 605 28.8
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 2.6e-54 217.6 648 28.2
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 5.8e-54 216.5 647 28.0
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 7.6e-54 216.1 642 28.7
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 9.9e-54 215.7 669 28.4
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 9.9e-54 215.7 627 29.5
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 9.9e-54 215.7 655 29.0
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.7e-53 214.9 653 29.1
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 1.7e-53 214.9 627 29.2
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 2.9e-53 214.2 662 28.4
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 2.9e-53 214.2 632 29.0
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 2.9e-53 214.2 626 29.1
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 3.8e-53 213.8 662 28.9
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 4.9e-53 213.4 645 28.7
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 6.4e-53 213.0 635 29.0
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.1e-52 212.2 661 28.7
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.1e-52 212.2 630 28.9
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.4e-52 211.8 665 28.6
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.4e-52 211.8 665 28.3
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.4e-52 211.8 656 29.3
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 5.4e-52 209.9 591 29.8
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 1.2e-51 208.8 632 28.2
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 2.1e-51 208.0 632 28.0
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 2.7e-51 207.6 594 30.0
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 3.5e-51 207.2 613 29.5
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 4.6e-51 206.8 592 29.6
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 4.6e-51 206.8 647 28.1
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.7e-50 204.9 598 29.6
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 5.1e-50 203.4 690 27.7
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 5.1e-50 203.4 652 28.5
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 6.6e-50 203.0 608 28.9
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 7.3e-49 199.5 588 29.6
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 2.0e-46 191.4 686 27.1
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 4.5e-46 190.3 650 27.4
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 9.9e-46 189.1 591 27.2
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.7e-45 188.3 821 24.5
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 1.7e-45 188.3 598 27.3
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 7.1e-44 183.0 595 27.6
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.3e-41 173.7 589 27.2
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.3e-37 162.2 518 27.0
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 2.2e-37 161.4 617 27.4
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.1e-33 149.1 490 27.1
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 2.1e-32 144.8 470 26.4
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 8.2e-32 142.9 222 36.5
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.3e-29 135.6 198 39.9
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 1.4e-28 132.1 727 24.8
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 2.5e-28 131.3 530 24.2
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.1e-25 122.5 585 25.6
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.6e-24 118.6 651 24.6
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.7e-24 117.5 495 24.2
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 1.2e-19 102.4 248 31.5
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.8e-18 98.6 278 28.4
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.7e-17 93.6 182 33.0
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 4.1e-15 87.4 210 33.3
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.8e-13 80.9 145 31.7
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.2e-11 75.9 156 31.4
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 2.7e-11 74.7 181 35.4
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.0e-10 72.8 156 30.8
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 7.4e-09 66.6 98 44.9
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.7e-08 65.5 198 27.3
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 4.8e-08 63.9 91 38.5
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.8e-07 62.0 188 30.3
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 9.1e-07 59.7 118 35.6


User provided reference genes

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