Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.1e-254 882.9 464 100.0
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 2.1e-24 117.9 203 31.5
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.4e-23 115.2 287 31.4
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.4e-23 114.4 288 29.2
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 4.0e-23 113.6 290 30.0
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 4.0e-23 113.6 289 29.4
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 4.0e-23 113.6 296 30.4
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 2.0e-22 111.3 303 27.7
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.0e-22 111.3 287 30.3
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 3.4e-22 110.5 213 29.1
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 3.4e-22 110.5 214 28.5
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 3.4e-22 110.5 286 28.7
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 4.5e-22 110.2 309 29.4
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 4.5e-22 110.2 214 29.0
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 4.5e-22 110.2 287 27.5
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 5.8e-22 109.8 300 28.7
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.8e-22 109.8 288 27.1
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 7.6e-22 109.4 287 27.9
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 7.6e-22 109.4 318 31.1
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 9.9e-22 109.0 210 30.0
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.3e-21 108.6 290 27.6
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.2e-21 107.8 288 28.5
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 2.2e-21 107.8 289 28.4
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.9e-21 107.5 291 28.2
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 2.9e-21 107.5 287 28.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 2.9e-21 107.5 288 28.1
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 2.9e-21 107.5 285 27.0
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 2.9e-21 107.5 287 29.6
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 2.9e-21 107.5 288 28.8
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 3.8e-21 107.1 290 29.3
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 4.9e-21 106.7 289 29.1
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 6.4e-21 106.3 288 28.1
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 6.4e-21 106.3 287 28.9
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.4e-21 106.3 297 29.6
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.4e-21 106.3 307 27.0
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 8.4e-21 105.9 292 28.8
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 8.4e-21 105.9 307 27.0
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 8.4e-21 105.9 307 27.0
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 8.4e-21 105.9 311 27.0
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 8.4e-21 105.9 291 27.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 8.4e-21 105.9 307 27.4
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-20 105.5 320 25.9
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.1e-20 105.5 320 25.9
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-20 105.5 288 29.2
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.4e-20 105.1 277 27.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-20 105.1 316 26.3
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.4e-20 105.1 287 30.0
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.4e-20 105.1 287 28.2
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.4e-20 105.1 214 29.4
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.4e-20 105.1 288 30.9
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.9e-20 104.8 212 30.2
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.9e-20 104.8 288 27.8
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.4e-20 104.4 291 29.2
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.4e-20 104.4 316 27.5
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 2.4e-20 104.4 215 29.3
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.2e-20 104.0 214 29.9
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.2e-20 103.6 287 27.9
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 4.2e-20 103.6 285 28.4
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 4.2e-20 103.6 214 29.4
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 4.2e-20 103.6 289 27.3
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 4.2e-20 103.6 289 30.8
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 5.4e-20 103.2 284 28.5
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.4e-20 103.2 316 27.2
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 5.4e-20 103.2 288 28.1
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 5.4e-20 103.2 288 29.2
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 5.4e-20 103.2 285 27.0
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 7.1e-20 102.8 287 27.9
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 7.1e-20 102.8 221 29.9
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 9.3e-20 102.4 310 29.4
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 9.3e-20 102.4 287 27.5
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 9.3e-20 102.4 316 27.5
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.2e-19 102.1 291 27.8
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.2e-19 102.1 287 27.2
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.2e-19 102.1 288 27.8
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.6e-19 101.7 286 26.6
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.6e-19 101.7 284 26.4
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.6e-19 101.7 316 26.9
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.6e-19 101.7 288 28.5
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.1e-19 101.3 288 27.8
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 2.1e-19 101.3 288 29.5
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.1e-19 101.3 288 29.5
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 2.7e-19 100.9 306 25.2
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.7e-19 100.9 216 31.9
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 3.5e-19 100.5 224 29.0
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 3.5e-19 100.5 290 28.6
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 4.6e-19 100.1 281 27.8
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 4.6e-19 100.1 287 26.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.6e-19 100.1 285 28.4
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 4.6e-19 100.1 288 27.4
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 6.0e-19 99.8 288 27.8
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 7.9e-19 99.4 290 27.9
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 7.9e-19 99.4 288 27.4
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 7.9e-19 99.4 297 25.3
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 7.9e-19 99.4 206 29.6
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.3e-18 98.6 286 27.3
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.3e-18 98.6 285 28.1
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.3e-18 98.6 283 29.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.8e-18 98.2 293 25.9
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.8e-18 98.2 294 28.2
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.8e-18 98.2 294 27.2
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.8e-18 98.2 295 27.1
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.8e-18 98.2 214 27.1
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 3.0e-18 97.4 303 26.7
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 3.0e-18 97.4 302 25.8
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 3.0e-18 97.4 302 25.8
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 3.0e-18 97.4 287 26.8
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 3.9e-18 97.1 215 27.9
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 5.1e-18 96.7 287 26.5
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 6.7e-18 96.3 293 25.6
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 6.7e-18 96.3 301 26.9
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 6.7e-18 96.3 287 27.9
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 8.7e-18 95.9 293 25.9
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 8.7e-18 95.9 293 25.9
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 8.7e-18 95.9 293 25.6
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 8.7e-18 95.9 287 24.7
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 8.7e-18 95.9 274 30.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.1e-17 95.5 192 33.9
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.1e-17 95.5 214 28.5
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.1e-17 95.5 286 25.9
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.1e-17 95.5 215 29.3
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.5e-17 95.1 213 26.8
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.5e-17 95.1 285 27.7
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.5e-17 95.1 287 25.8
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.5e-17 95.1 285 27.7
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.5e-17 95.1 274 31.0
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 2.5e-17 94.4 302 25.5
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.5e-17 94.4 326 26.1
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 3.3e-17 94.0 286 25.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 4.3e-17 93.6 285 25.6
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.3e-17 93.6 287 25.4
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 5.6e-17 93.2 296 27.7
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 7.4e-17 92.8 293 24.9
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 9.6e-17 92.4 287 26.1
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.6e-16 90.5 319 28.2
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.8e-16 90.1 285 27.4
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.2e-16 89.7 214 28.0
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.4e-15 88.6 286 28.7
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 3.1e-15 87.4 244 23.8
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 9.3e-12 75.9 288 27.4
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.2e-11 75.5 213 26.3
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 2.5e-09 67.8 290 24.8
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 3.3e-09 67.4 239 25.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 6.9e-07 59.7 176 26.7
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-05 55.8 225 27.6


User provided reference genes

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