Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 0.0e+00 1119.4 568 100.0
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 1.0e-100 371.7 555 40.4
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 3.8e-100 369.8 520 40.8
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 3.3e-96 356.7 530 40.6
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 7.4e-96 355.5 494 40.9
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 2.6e-93 347.1 545 39.1
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 2.1e-90 337.4 559 38.5
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 5.7e-88 329.3 474 39.2
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 7.0e-86 322.4 562 35.8
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 6.5e-84 315.8 524 39.1
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 1.2e-82 311.6 523 38.4
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 2.7e-82 310.5 522 38.1
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 8.0e-82 308.9 535 37.8
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 1.0e-81 308.5 535 37.4
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 1.8e-81 307.8 522 37.0
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 2.3e-81 307.4 524 37.8
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 2.3e-81 307.4 526 36.9
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 6.8e-81 305.8 509 36.7
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 1.2e-80 305.1 533 37.5
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 1.5e-80 304.7 522 36.6
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 2.0e-80 304.3 526 36.5
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 3.4e-80 303.5 533 37.1
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 4.4e-80 303.1 525 35.4
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 7.5e-80 302.4 535 37.2
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 7.5e-80 302.4 525 36.4
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 1.3e-79 301.6 523 35.9
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 2.2e-79 300.8 535 34.8
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 2.8e-79 300.4 526 37.6
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 3.7e-79 300.1 534 36.7
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 3.7e-79 300.1 533 35.3
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 3.7e-79 300.1 528 36.4
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 1.4e-78 298.1 526 36.5
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 2.4e-78 297.4 533 35.1
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 2.4e-78 297.4 549 34.8
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 2.4e-78 297.4 519 37.4
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 3.1e-78 297.0 532 36.7
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 3.1e-78 297.0 490 37.3
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 3.1e-78 297.0 530 34.7
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 3.1e-78 297.0 516 35.7
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 3.1e-78 297.0 526 35.7
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 4.1e-78 296.6 534 36.9
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 5.4e-78 296.2 530 34.9
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 7.0e-78 295.8 514 37.5
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 9.1e-78 295.4 524 34.5
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 9.1e-78 295.4 531 35.6
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 1.2e-77 295.0 535 36.3
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 1.2e-77 295.0 517 36.8
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 1.2e-77 295.0 527 35.9
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 1.2e-77 295.0 521 35.9
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 1.6e-77 294.7 520 35.2
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 1.6e-77 294.7 523 35.2
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 1.6e-77 294.7 469 39.0
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 1.6e-77 294.7 531 35.6
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 1.6e-77 294.7 536 34.3
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 2.0e-77 294.3 528 34.3
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 2.0e-77 294.3 520 35.6
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 2.0e-77 294.3 527 36.2
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 3.5e-77 293.5 521 35.1
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 3.5e-77 293.5 527 36.4
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 5.9e-77 292.7 529 35.7
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 5.9e-77 292.7 446 39.5
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 1.0e-76 292.0 527 35.7
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 1.7e-76 291.2 472 38.3
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 1.7e-76 291.2 534 35.4
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 2.9e-76 290.4 525 35.4
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 3.8e-76 290.0 555 35.3
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 5.0e-76 289.7 522 38.1
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 1.1e-75 288.5 527 34.7
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 1.1e-75 288.5 525 34.7
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 1.1e-75 288.5 506 36.6
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.9e-75 287.7 520 34.8
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 1.9e-75 287.7 523 36.7
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 1.9e-75 287.7 525 34.9
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 3.3e-75 287.0 528 37.3
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 4.2e-75 286.6 529 35.2
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 5.5e-75 286.2 524 36.6
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 9.5e-75 285.4 529 34.6
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 9.5e-75 285.4 556 33.6
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 1.6e-74 284.6 524 34.2
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 1.6e-74 284.6 531 35.2
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 2.8e-74 283.9 527 35.1
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 2.8e-74 283.9 523 35.6
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 4.7e-74 283.1 548 34.7
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 4.7e-74 283.1 523 34.6
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 6.1e-74 282.7 445 37.1
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 8.0e-74 282.3 454 39.0
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 1.8e-73 281.2 530 35.8
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 1.8e-73 281.2 533 35.5
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 2.3e-73 280.8 532 34.0
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 3.0e-73 280.4 521 34.7
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 5.7e-72 276.2 444 37.4
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 1.3e-71 275.0 529 35.3
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 2.2e-71 274.2 524 33.8
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 3.7e-71 273.5 476 35.7
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 4.9e-71 273.1 518 34.4
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 1.1e-70 271.9 529 35.0
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 1.1e-70 271.9 528 34.7
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 3.2e-70 270.4 524 34.7
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 4.1e-70 270.0 523 34.4
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 7.0e-70 269.2 495 33.9
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 5.9e-69 266.2 530 34.7
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 3.3e-67 260.4 436 35.1
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 3.3e-67 260.4 533 34.1
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 4.3e-67 260.0 528 33.7
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 9.5e-67 258.8 545 32.8
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.0e-65 255.4 528 33.5
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 1.8e-65 254.6 492 34.1
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 2.3e-65 254.2 552 31.9
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.2e-64 251.9 523 33.5
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 5.8e-64 249.6 547 32.5
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 7.5e-64 249.2 449 35.0
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 2.9e-63 247.3 376 38.8
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 6.4e-63 246.1 554 30.5
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 1.2e-61 241.9 561 32.6
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 1.2e-61 241.9 428 34.8
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 2.7e-61 240.7 613 30.2
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 6.0e-61 239.6 529 33.6
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 9.5e-59 232.3 533 33.4
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 4.0e-57 226.9 528 32.0
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 6.8e-57 226.1 388 36.9
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 8.3e-55 219.2 429 32.9
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.4e-54 217.6 528 31.1
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 9.2e-54 215.7 574 30.7
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 2.1e-50 204.5 517 30.9
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.9e-43 181.4 463 30.5
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 1.4e-41 175.3 351 35.3
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 1.4e-38 165.2 239 36.8
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 7.8e-37 159.5 314 32.8
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 2.1e-34 151.4 461 27.8
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 4.4e-32 143.7 289 33.9
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 1.3e-26 125.6 162 42.0
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 2.2e-23 114.8 320 28.8
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 2.6e-16 91.3 106 42.5
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 2.9e-07 61.2 68 45.6


User provided reference genes

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