Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 0.0e+00 1623.2 827 100.0
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 7.2e-15 87.0 152 35.5
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 7.2e-15 87.0 152 35.5
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 9.4e-15 86.7 152 34.2
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 1.6e-14 85.9 162 34.6
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 1.6e-14 85.9 163 32.5
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 2.1e-14 85.5 152 34.9
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 2.7e-14 85.1 152 32.2
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 2.7e-14 85.1 161 32.9
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 3.6e-14 84.7 152 34.9
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 3.6e-14 84.7 161 32.3
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 3.6e-14 84.7 152 34.9
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 4.7e-14 84.3 152 34.9
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 4.7e-14 84.3 152 31.6
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 8.0e-14 83.6 153 34.6
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 8.0e-14 83.6 152 34.2
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 8.0e-14 83.6 152 33.6
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 1.0e-13 83.2 152 34.2
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 1.0e-13 83.2 152 34.2
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 1.0e-13 83.2 153 35.3
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 1.0e-13 83.2 153 35.3
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 1.0e-13 83.2 152 34.2
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.0e-13 83.2 152 34.2
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 1.4e-13 82.8 152 34.2
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 1.4e-13 82.8 153 35.3
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 1.4e-13 82.8 152 34.9
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 1.4e-13 82.8 152 33.6
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 1.4e-13 82.8 153 35.3
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 1.8e-13 82.4 153 35.3
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.3e-13 82.0 152 32.9
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.3e-13 82.0 152 32.9
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 2.3e-13 82.0 153 34.6
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 3.0e-13 81.6 152 33.6
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 3.0e-13 81.6 152 34.9
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 3.9e-13 81.3 152 33.6
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 3.9e-13 81.3 152 32.9
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 5.2e-13 80.9 152 33.6
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 5.2e-13 80.9 152 33.6
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 5.2e-13 80.9 152 32.9
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 6.7e-13 80.5 152 33.6
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 6.7e-13 80.5 153 34.0
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 6.7e-13 80.5 153 34.0
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 6.7e-13 80.5 236 28.4
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 8.8e-13 80.1 153 33.3
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 8.8e-13 80.1 153 34.0
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.1e-12 79.7 153 34.6
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.1e-12 79.7 239 27.6
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 1.1e-12 79.7 152 32.2
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 1.1e-12 79.7 152 32.9
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 1.1e-12 79.7 152 31.6
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 1.5e-12 79.3 153 33.3
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 2.0e-12 79.0 153 34.0
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 2.0e-12 79.0 153 33.3
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 2.0e-12 79.0 153 34.6
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 2.6e-12 78.6 153 32.7
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 2.6e-12 78.6 152 32.2
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 2.6e-12 78.6 151 34.4
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 2.6e-12 78.6 153 32.7
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 3.3e-12 78.2 152 31.6
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 3.3e-12 78.2 152 33.6
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 3.3e-12 78.2 153 33.3
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 4.4e-12 77.8 152 31.6
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 4.4e-12 77.8 152 31.6
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 5.7e-12 77.4 152 30.3
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 5.7e-12 77.4 152 31.6
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 5.7e-12 77.4 152 31.6
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 7.4e-12 77.0 152 31.6
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 9.7e-12 76.6 152 30.3
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 1.3e-11 76.3 239 26.8
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.7e-11 75.9 152 31.6
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.7e-11 75.9 152 32.2
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.7e-11 75.9 244 26.2
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 2.2e-11 75.5 152 32.2
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.2e-11 75.5 152 31.6
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.2e-11 75.5 152 31.6
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 2.2e-11 75.5 157 31.8
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 2.8e-11 75.1 152 31.6
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 2.8e-11 75.1 152 31.6
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 3.7e-11 74.7 244 25.8
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 4.8e-11 74.3 152 30.3
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 4.8e-11 74.3 152 28.3
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 6.3e-11 73.9 152 31.6
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.1e-10 73.2 152 30.3
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 3.1e-10 71.6 153 31.4
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 3.1e-10 71.6 166 29.5
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 5.3e-10 70.9 188 29.8
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 7.0e-10 70.5 152 30.3
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 9.1e-10 70.1 215 23.7
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.2e-09 69.7 152 29.6
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 1.2e-09 69.7 169 29.6
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 1.2e-09 69.7 157 29.3
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 2.0e-09 68.9 175 29.1
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 2.6e-09 68.6 158 26.6
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 7.7e-09 67.0 170 25.9
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 7.7e-09 67.0 170 25.9
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 1.3e-08 66.2 136 27.9
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 2.2e-08 65.5 153 31.4
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.9e-08 65.1 136 28.7
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 5.0e-08 64.3 136 27.9
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 5.0e-08 64.3 137 28.5
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 1.1e-07 63.2 173 29.5
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 3.2e-07 61.6 154 29.9
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 4.7e-06 57.8 152 27.0
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 6.1e-06 57.4 152 27.6


User provided reference genes

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