Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 0.0e+00 1115.9 551 100.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 8.4e-169 597.8 553 54.6
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 2.0e-162 576.6 555 54.1
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.3e-161 573.9 550 54.9
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 5.4e-160 568.5 545 54.9
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 2.1e-159 566.6 544 54.2
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 6.0e-159 565.1 544 54.8
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 7.8e-159 564.7 547 53.7
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 7.8e-159 564.7 545 54.7
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 1.3e-158 563.9 546 54.2
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 1.3e-158 563.9 547 54.7
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 2.3e-158 563.1 546 54.4
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.0e-158 562.8 544 55.0
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 3.0e-158 562.8 546 54.8
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 3.0e-158 562.8 544 54.8
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 3.0e-158 562.8 546 54.4
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 3.9e-158 562.4 546 54.2
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 5.1e-158 562.0 544 54.2
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 5.1e-158 562.0 542 53.3
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 6.6e-158 561.6 547 53.6
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 6.6e-158 561.6 545 53.8
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 8.7e-158 561.2 550 54.0
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.1e-157 560.8 543 53.8
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.1e-157 560.8 547 54.1
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.1e-157 560.8 544 54.4
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.1e-157 560.8 544 54.6
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 1.1e-157 560.8 550 53.6
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 1.5e-157 560.5 544 54.0
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 1.9e-157 560.1 550 54.2
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.9e-157 560.1 544 54.2
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 2.5e-157 559.7 547 53.4
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 2.5e-157 559.7 545 53.9
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 2.5e-157 559.7 550 53.3
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 3.3e-157 559.3 544 54.4
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 3.3e-157 559.3 547 54.1
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 4.3e-157 558.9 544 54.4
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 4.3e-157 558.9 548 53.6
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 4.3e-157 558.9 550 53.3
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 7.3e-157 558.1 544 54.6
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 7.3e-157 558.1 543 54.1
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 9.6e-157 557.8 546 54.2
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 1.3e-156 557.4 547 54.1
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.6e-156 557.0 550 53.8
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.6e-156 557.0 550 53.5
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 2.1e-156 556.6 544 53.7
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 2.1e-156 556.6 544 53.3
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 2.1e-156 556.6 547 53.2
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 2.1e-156 556.6 544 54.6
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 2.8e-156 556.2 544 53.5
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 3.6e-156 555.8 544 53.3
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 3.6e-156 555.8 544 53.3
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 3.6e-156 555.8 544 53.9
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 4.8e-156 555.4 546 53.7
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 6.2e-156 555.1 544 52.6
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.2e-156 555.1 544 53.9
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 8.1e-156 554.7 544 53.3
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.4e-155 553.9 549 53.6
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 1.8e-155 553.5 544 53.3
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.8e-155 553.5 544 53.3
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 1.8e-155 553.5 544 53.7
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 2.4e-155 553.1 550 52.9
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 2.4e-155 553.1 544 53.1
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 2.4e-155 553.1 548 53.1
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 3.1e-155 552.7 544 53.1
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 4.0e-155 552.4 544 53.7
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 5.3e-155 552.0 544 53.7
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 6.9e-155 551.6 544 52.9
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 9.0e-155 551.2 551 51.9
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 1.2e-154 550.8 551 52.5
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 1.5e-154 550.4 545 52.5
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 2.0e-154 550.1 545 52.7
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 2.0e-154 550.1 546 53.3
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 7.6e-154 548.1 545 52.7
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 9.9e-154 547.7 545 53.6
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.3e-153 547.4 544 53.7
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 6.4e-153 545.0 560 52.1
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 6.4e-153 545.0 545 52.7
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 8.4e-153 544.7 544 53.1
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 8.4e-153 544.7 544 52.9
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 8.4e-153 544.7 557 51.9
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 1.9e-152 543.5 572 51.4
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.4e-152 543.1 553 52.4
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 4.2e-152 542.3 561 51.7
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 4.2e-152 542.3 547 53.7
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.6e-151 540.4 550 52.4
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 1.6e-151 540.4 556 52.5
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.1e-151 540.0 567 50.8
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.3e-150 537.3 545 52.5
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.8e-150 537.0 555 52.6
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 5.1e-150 535.4 567 51.7
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 6.7e-150 535.0 550 52.0
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.9e-149 533.5 529 52.7
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 9.6e-149 531.2 561 51.2
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 1.6e-148 530.4 570 50.4
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 4.9e-145 518.8 515 52.4
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 7.1e-144 515.0 579 49.4
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 7.9e-143 511.5 546 50.7
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 2.3e-142 510.0 542 51.3
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 2.3e-142 510.0 544 50.7
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.5e-141 507.3 579 49.4
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.5e-141 506.5 542 51.1
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 3.3e-141 506.1 544 49.1
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.3e-140 504.2 544 50.6
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 9.0e-139 498.0 492 53.7
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 7.6e-138 495.0 585 47.5
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.9e-137 493.0 543 50.1
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 7.1e-136 488.4 476 54.8
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 7.1e-136 488.4 525 49.9
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.2e-135 487.6 597 47.6
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.3e-134 483.4 558 49.3
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 2.5e-133 479.9 544 47.2
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 4.1e-131 472.6 470 53.4
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.9e-126 456.1 544 48.0
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 4.3e-125 452.6 558 45.3
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.7e-121 440.7 408 58.1
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 3.9e-118 429.5 436 53.0
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 2.7e-111 406.8 360 57.2
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 4.5e-106 389.4 344 57.8
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 2.2e-105 387.1 534 43.1
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 1.5e-101 374.4 358 54.5
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 9.1e-91 338.6 406 49.0
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 2.0e-85 320.9 256 60.9
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 4.0e-38 163.7 199 45.7
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 7.1e-35 152.9 197 42.1
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 2.8e-31 141.0 365 30.4
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 4.0e-30 137.1 316 28.8
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.9e-27 128.3 114 52.6
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 5.5e-27 126.7 151 43.7
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 4.6e-26 123.6 317 30.9
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 1.3e-25 122.1 218 39.0
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.3e-24 117.5 207 34.8
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 6.7e-17 93.2 100 44.0
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 7.4e-16 89.7 100 43.0
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.5e-13 82.0 73 52.1
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 5.0e-12 77.0 56 62.5
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 6.1e-10 70.1 59 50.8
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.9e-09 67.4 141 36.2
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 5.1e-09 67.0 45 57.8
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 3.7e-07 60.8 201 26.9


User provided reference genes

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