Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 0.0e+00 1439.1 716 100.0
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.4e-78 298.5 548 32.1
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 4.1e-75 287.0 502 31.9
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 9.1e-75 285.8 570 30.4
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 1.5e-72 278.5 520 30.8
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 2.5e-72 277.7 520 31.0
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 5.5e-72 276.6 520 30.8
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 5.5e-72 276.6 520 32.3
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 9.5e-72 275.8 520 31.0
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 1.2e-71 275.4 520 31.7
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 1.2e-71 275.4 520 30.4
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 1.2e-71 275.4 520 30.4
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 1.2e-71 275.4 520 30.6
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 1.6e-71 275.0 520 30.6
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 2.1e-71 274.6 520 31.2
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.1e-71 274.6 522 30.3
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.8e-71 274.2 520 30.4
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 3.6e-71 273.9 520 30.6
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 3.6e-71 273.9 520 31.5
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 4.7e-71 273.5 520 30.0
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 4.7e-71 273.5 521 30.3
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 4.7e-71 273.5 538 29.2
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 6.1e-71 273.1 520 30.6
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 6.1e-71 273.1 520 30.2
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 6.1e-71 273.1 520 30.0
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 1.0e-70 272.3 520 30.6
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.4e-70 271.9 520 30.2
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 1.8e-70 271.6 520 30.0
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 3.0e-70 270.8 520 30.6
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 4.0e-70 270.4 520 29.6
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 4.0e-70 270.4 520 29.6
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 4.0e-70 270.4 520 29.8
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 4.0e-70 270.4 521 30.7
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 4.0e-70 270.4 522 32.2
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 5.2e-70 270.0 520 29.2
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 5.2e-70 270.0 522 29.9
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 5.2e-70 270.0 520 31.0
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 6.8e-70 269.6 523 29.8
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 6.8e-70 269.6 520 30.2
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 6.8e-70 269.6 536 29.3
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 8.8e-70 269.2 520 29.8
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 8.8e-70 269.2 520 30.0
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 8.8e-70 269.2 520 30.4
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.2e-69 268.9 521 30.9
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 1.5e-69 268.5 520 29.6
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.5e-69 268.5 522 29.7
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 1.5e-69 268.5 539 30.6
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 2.0e-69 268.1 520 29.6
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 2.6e-69 267.7 536 29.5
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 4.4e-69 266.9 520 29.8
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 4.4e-69 266.9 520 30.0
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 5.7e-69 266.5 520 29.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 7.5e-69 266.2 524 29.6
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 9.8e-69 265.8 520 30.2
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 1.3e-68 265.4 524 30.0
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 1.3e-68 265.4 520 30.4
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 1.3e-68 265.4 520 29.2
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 2.2e-68 264.6 521 29.6
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 2.2e-68 264.6 520 29.6
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 2.8e-68 264.2 521 29.6
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 2.8e-68 264.2 522 29.9
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 3.7e-68 263.8 521 29.6
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 3.7e-68 263.8 519 30.1
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 3.7e-68 263.8 520 30.0
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 4.9e-68 263.5 559 29.9
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 4.9e-68 263.5 520 29.4
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 6.3e-68 263.1 520 29.6
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 6.3e-68 263.1 521 30.7
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 8.3e-68 262.7 520 29.2
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 8.3e-68 262.7 520 29.8
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.1e-67 262.3 521 30.7
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 1.1e-67 262.3 521 30.1
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.1e-67 262.3 521 29.8
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 1.4e-67 261.9 524 29.2
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.4e-67 261.9 517 29.2
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 1.8e-67 261.5 522 29.1
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 1.8e-67 261.5 508 29.3
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 1.8e-67 261.5 520 28.8
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 2.4e-67 261.2 521 29.4
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 2.4e-67 261.2 521 29.4
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.4e-67 261.2 539 30.2
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 3.1e-67 260.8 520 29.0
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 3.1e-67 260.8 520 29.0
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 3.1e-67 260.8 544 29.0
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 4.1e-67 260.4 553 28.9
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 4.1e-67 260.4 520 28.8
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 5.4e-67 260.0 520 29.4
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 5.4e-67 260.0 520 29.4
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 7.0e-67 259.6 521 29.6
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 7.0e-67 259.6 520 28.8
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 9.2e-67 259.2 521 29.0
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 1.2e-66 258.8 547 28.5
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.6e-66 258.5 521 29.0
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.6e-66 258.5 543 28.9
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 2.0e-66 258.1 520 28.8
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 2.7e-66 257.7 533 28.5
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 2.7e-66 257.7 539 28.4
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 3.5e-66 257.3 520 29.4
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 5.9e-66 256.5 545 28.8
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 5.9e-66 256.5 521 29.2
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 7.8e-66 256.1 533 28.5
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 7.8e-66 256.1 539 28.4
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 1.0e-65 255.8 520 29.0
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.0e-65 255.8 520 29.4
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.3e-65 255.4 520 29.0
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 1.7e-65 255.0 555 28.8
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 2.9e-65 254.2 545 27.9
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 3.8e-65 253.8 538 29.0
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 8.6e-65 252.7 521 29.6
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 8.6e-65 252.7 520 28.5
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.5e-64 251.1 520 28.7
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 4.3e-64 250.4 539 29.1
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 4.3e-64 250.4 572 29.4
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 4.3e-64 250.4 520 29.2
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 5.6e-64 250.0 554 27.6
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 7.3e-64 249.6 520 28.7
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.8e-63 247.7 423 31.7
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 3.6e-63 247.3 572 29.0
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 4.7e-63 246.9 527 29.4
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 4.7e-63 246.9 423 32.9
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 6.1e-63 246.5 520 28.7
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 8.0e-63 246.1 507 30.2
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 1.4e-62 245.4 619 27.1
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.4e-62 245.4 423 32.6
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.4e-62 245.4 533 29.3
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.8e-62 245.0 521 29.6
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 1.8e-62 245.0 520 28.7
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 4.0e-62 243.8 520 29.2
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 6.8e-62 243.0 522 31.0
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 7.5e-61 239.6 423 31.0
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 9.8e-61 239.2 580 27.2
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.3e-60 238.8 521 29.6
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 2.9e-60 237.7 520 30.2
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 3.7e-60 237.3 518 28.6
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 4.9e-60 236.9 520 28.3
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 1.0e-57 229.2 526 28.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.9e-57 227.3 521 27.1
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.9e-56 224.9 497 29.0
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.2e-55 222.2 510 27.5
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.6e-55 221.9 518 29.7
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 8.0e-55 219.5 520 26.2
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.3e-52 212.2 520 26.0
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 7.0e-51 206.5 520 26.3
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.0e-50 204.9 517 25.9
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 2.0e-50 204.9 287 38.0
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 2.7e-50 204.5 582 23.9
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.5e-48 198.0 549 26.6
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.1e-47 194.9 526 25.5
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 8.1e-47 193.0 532 25.4
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.2e-42 179.1 252 35.7
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 4.6e-42 177.2 465 26.7
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 4.9e-36 157.1 509 25.1
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.1e-35 156.0 509 24.6
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 5.6e-32 143.7 556 26.4
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.3e-28 132.5 191 36.1
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.5e-24 119.0 189 33.9
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 4.0e-22 110.9 204 30.4
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 7.6e-21 106.7 176 31.2
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 3.8e-20 104.4 227 29.5
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 4.3e-16 90.9 200 28.5
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.8e-15 87.4 334 20.7
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.7e-12 79.0 233 26.2
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 7.1e-11 73.6 155 31.0
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 8.7e-09 66.6 152 25.7
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.3e-07 62.8 232 24.6
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 2.4e-06 58.5 66 40.9


User provided reference genes

Program Settings