Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 0.0e+00 2981.4 1491 100.0
Cfa023988 Carpinus fangiana HOM05D012225 ORTHO05D006699 2.8e-41 175.6 284 39.8
Cfa026732 Carpinus fangiana HOM05D012225 ORTHO05D124966 3.8e-22 112.1 391 29.7
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 6.4e-22 111.3 412 28.9
Cfa022816 Carpinus fangiana HOM05D012225 ORTHO05D124422 1.5e-18 100.1 365 26.0
Cfa022601 Carpinus fangiana HOM05D012225 ORTHO05D125032 1.4e-16 93.6 260 29.2
Cfa022866 Carpinus fangiana HOM05D012225 ORTHO05D125906 3.4e-15 89.0 251 31.1
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 7.9e-12 77.8 252 31.3
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 1.9e-10 73.2 277 27.8
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 7.4e-10 71.2 242 29.3
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 7.4e-10 71.2 268 28.7
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 9.6e-10 70.9 190 27.4
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 1.6e-09 70.1 279 28.3
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 1.6e-09 70.1 268 28.0
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 2.1e-09 69.7 268 28.7
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 2.8e-09 69.3 194 28.9
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 6.2e-09 68.2 147 30.6
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 6.2e-09 68.2 248 27.4
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 6.2e-09 68.2 148 31.1
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 8.1e-09 67.8 249 28.5
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 8.1e-09 67.8 147 30.6
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 1.1e-08 67.4 147 29.9
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 1.1e-08 67.4 269 28.3
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 1.1e-08 67.4 120 31.7
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 1.4e-08 67.0 116 32.8
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 1.4e-08 67.0 269 28.6
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 1.4e-08 67.0 291 26.8
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 1.4e-08 67.0 268 28.4
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 1.8e-08 66.6 116 31.9
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 1.8e-08 66.6 147 29.9
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 1.8e-08 66.6 147 29.3
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 1.8e-08 66.6 149 29.5
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 2.4e-08 66.2 116 31.0
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 2.4e-08 66.2 147 29.3
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 2.4e-08 66.2 271 27.7
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 3.1e-08 65.9 272 27.6
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 3.1e-08 65.9 276 27.9
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 3.1e-08 65.9 116 31.0
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 4.0e-08 65.5 147 28.6
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 4.0e-08 65.5 147 29.3
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 4.0e-08 65.5 147 29.3
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 5.3e-08 65.1 269 27.9
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 5.3e-08 65.1 269 27.9
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 5.3e-08 65.1 116 31.0
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 5.3e-08 65.1 274 27.7
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 6.9e-08 64.7 116 30.2
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 6.9e-08 64.7 116 30.2
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 6.9e-08 64.7 116 31.0
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 6.9e-08 64.7 116 31.0
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 6.9e-08 64.7 116 31.0
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 6.9e-08 64.7 116 31.0
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 6.9e-08 64.7 147 28.6
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 6.9e-08 64.7 147 28.6
Cfa027314 Carpinus fangiana HOM05D013358 ORTHO05D125844 9.0e-08 64.3 222 27.0
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 9.0e-08 64.3 147 28.6
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 9.0e-08 64.3 269 27.1
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 9.0e-08 64.3 147 28.6
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 9.0e-08 64.3 147 27.9
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 9.0e-08 64.3 116 31.0
AagrBONN_evm.TU.Sc2ySwM_344.1621 Anthoceros agrestis HOM05D005437 ORTHO05D006699 1.2e-07 63.9 277 24.9
FAN21G3259 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.2e-07 63.9 207 29.5
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 1.2e-07 63.9 147 28.6
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 1.5e-07 63.5 147 28.6
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 1.5e-07 63.5 269 27.5
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 2.0e-07 63.2 147 27.2
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 2.0e-07 63.2 147 27.9
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 2.6e-07 62.8 167 26.9
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 2.6e-07 62.8 274 26.6
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 2.6e-07 62.8 147 27.2
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 2.6e-07 62.8 205 27.8
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 2.6e-07 62.8 147 29.9
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.6e-07 62.8 191 27.7
Peaxi162Scf00036g01013 Petunia axillaris HOM05D003109 ORTHO05D003578 2.6e-07 62.8 344 23.8
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 2.6e-07 62.8 240 28.8
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 2.6e-07 62.8 147 27.2
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 2.6e-07 62.8 116 31.0
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 3.4e-07 62.4 116 30.2
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 3.4e-07 62.4 269 27.1
RcHm_v2.0_Chr5g0021271 Rosa chinensis HOM05D003109 ORTHO05D003578 3.4e-07 62.4 166 31.3
CAN.G809.44 Capsicum annuum HOM05D003109 ORTHO05D003578 4.5e-07 62.0 175 29.7
FAN11G0200 Fragaria x ananassa HOM05D003109 ORTHO05D003578 4.5e-07 62.0 174 28.7
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 4.5e-07 62.0 116 31.0
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 4.5e-07 62.0 147 27.2
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 5.8e-07 61.6 116 31.9
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 5.8e-07 61.6 235 26.8
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 7.6e-07 61.2 116 29.3
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 7.6e-07 61.2 116 30.2
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 7.6e-07 61.2 252 25.0
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 7.6e-07 61.2 123 29.3
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 7.6e-07 61.2 203 26.1
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 1.0e-06 60.8 244 23.0
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 1.0e-06 60.8 269 26.8
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 1.0e-06 60.8 148 27.7
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 1.3e-06 60.5 116 29.3
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 1.3e-06 60.5 116 29.3
Sopen02g026500 Solanum pennellii HOM05D003109 ORTHO05D003578 1.3e-06 60.5 177 29.4
PGSC0003DMG400007330 Solanum tuberosum HOM05D003109 ORTHO05D003578 1.3e-06 60.5 177 29.4
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 1.7e-06 60.1 116 30.2
SMO144G0105 Selaginella moellendorffii HOM05D005437 ORTHO05D006699 1.7e-06 60.1 115 33.0
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 2.2e-06 59.7 147 25.9
HanXRQChr01g0006281 Helianthus annuus HOM05D003109 ORTHO05D003578 2.2e-06 59.7 162 28.4
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 2.9e-06 59.3 116 29.3
SGA_v2.0_scaffold341G49369 Striga asiatica HOM05D003109 ORTHO05D003578 2.9e-06 59.3 187 29.9
Dinv26304 Davidia involucrata HOM05D003109 ORTHO05D003578 3.8e-06 58.9 188 30.9
Dinv26326 Davidia involucrata HOM05D003109 ORTHO05D003578 3.8e-06 58.9 188 30.9
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.8e-06 58.9 145 26.2
Nitab4.5_0011308g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 3.8e-06 58.9 175 30.3
Cfa024220 Carpinus fangiana HOM05D009230 ORTHO05D125212 6.5e-06 58.2 133 27.8
Nn7g37999 Nelumbo nucifera HOM05D005437 ORTHO05D006699 6.5e-06 58.2 127 33.1
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 6.5e-06 58.2 242 26.4
AagrBONN_evm.TU.Sc2ySwM_228.2820 Anthoceros agrestis HOM05D003109 ORTHO05D003578 8.4e-06 57.8 164 28.0


User provided reference genes

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