Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025010 Carpinus fangiana HOM05D001660 ORTHO05D003277 5.9e-129 464.2 226 100.0
PGR042G2885 Punica granatum HOM05D001660 ORTHO05D003277 2.9e-27 126.3 195 37.4
CANSAT64G2883 Cannabis sativa HOM05D001660 ORTHO05D003277 1.5e-26 124.0 199 36.7
PRCOL_00005738 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 1.9e-26 123.6 193 34.2
Lj1g0015056 Lotus japonicus HOM05D001660 ORTHO05D003277 2.5e-26 123.2 199 37.7
COL.COLO4_31583 Corchorus olitorius HOM05D001660 ORTHO05D003277 3.2e-26 122.9 195 36.9
Sed0021522 Sechium edule HOM05D001660 ORTHO05D003277 5.5e-26 122.1 196 35.7
Sc08g0003500 Simmondsia chinensis HOM05D001660 ORTHO05D003277 7.2e-26 121.7 196 36.7
Gorai.009G173700 Gossypium raimondii HOM05D001660 ORTHO05D003277 9.4e-26 121.3 207 35.3
PGR004G2075 Punica granatum HOM05D001660 ORTHO05D003277 9.4e-26 121.3 195 36.9
Carub.0007s1997 Capsella rubella HOM05D001660 ORTHO05D003277 1.2e-25 120.9 195 37.9
Cpa.g.sc27.119 Carica papaya HOM05D001660 ORTHO05D003277 1.2e-25 120.9 196 36.2
Solyc02g079100.3 Solanum lycopersicum HOM05D001660 ORTHO05D003277 1.2e-25 120.9 195 37.9
SGA_v2.0_scaffold114G31978 Striga asiatica HOM05D001660 ORTHO05D003277 1.2e-25 120.9 195 35.9
arahy.Tifrunner.gnm1.ann1.F92SL8 Arachis hypogaea HOM05D001660 ORTHO05D003277 2.1e-25 120.2 199 37.2
arahy.Tifrunner.gnm1.ann1.YQ76T0 Arachis hypogaea HOM05D001660 ORTHO05D003277 2.1e-25 120.2 199 37.2
Nitab4.5_0003834g0030 Nicotiana tabacum HOM05D001660 ORTHO05D003277 2.1e-25 120.2 195 36.4
PGSC0003DMG400022409 Solanum tuberosum HOM05D001660 ORTHO05D003277 2.1e-25 120.2 195 37.4
GSVIVG01003195001 Vitis vinifera HOM05D001660 ORTHO05D003277 2.1e-25 120.2 195 35.9
GSVIVG01003197001 Vitis vinifera HOM05D001660 ORTHO05D003277 2.1e-25 120.2 195 35.9
Zm00001eb278020 Zea mays HOM05D001660 ORTHO05D003277 2.1e-25 120.2 204 36.3
Os10g0464400 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D003277 2.7e-25 119.8 197 36.5
Peaxi162Scf00355g00915 Petunia axillaris HOM05D001660 ORTHO05D003277 2.7e-25 119.8 195 37.4
Actinidia27000 Actinidia chinensis HOM05D001660 ORTHO05D003277 3.6e-25 119.4 206 34.5
Gohir.A05G165500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 3.6e-25 119.4 199 36.2
Nitab4.5_0000190g0120 Nicotiana tabacum HOM05D001660 ORTHO05D003277 3.6e-25 119.4 195 36.9
AL7G32600 Arabidopsis lyrata HOM05D001660 ORTHO05D003277 4.7e-25 119.0 195 36.9
EL10Ac8g20526 Beta vulgaris HOM05D001660 ORTHO05D003277 4.7e-25 119.0 195 34.9
AT4G21470 Arabidopsis thaliana HOM05D001660 ORTHO05D003277 6.1e-25 118.6 195 36.9
Eucgr.G00853 Eucalyptus grandis HOM05D001660 ORTHO05D003277 6.1e-25 118.6 199 35.7
Nitab4.5_0003574g0040 Nicotiana tabacum HOM05D001660 ORTHO05D003277 8.0e-25 118.2 195 36.9
Prupe.8G053000 Prunus persica HOM05D001660 ORTHO05D003277 8.0e-25 118.2 195 34.9
Hund21276 Selenicereus undatus HOM05D001660 ORTHO05D003277 8.0e-25 118.2 195 34.9
Sopen02g023910 Solanum pennellii HOM05D001660 ORTHO05D003277 8.0e-25 118.2 195 36.9
Ciclev10015592m.g Citrus clementina HOM05D001660 ORTHO05D003277 1.0e-24 117.9 196 36.2
FAN25G0401 Fragaria x ananassa HOM05D001660 ORTHO05D003277 1.0e-24 117.9 195 35.9
Oeu016124.1 Olea europaea HOM05D001660 ORTHO05D003277 1.0e-24 117.9 195 35.9
Manes.16G020800 Manihot esculenta HOM05D001660 ORTHO05D003277 1.4e-24 117.5 195 36.4
MCO04G323 Micromonas commoda HOM05D001660 ORTHO05D003277 1.4e-24 117.5 194 33.5
Phvul.002G222300 Phaseolus vulgaris HOM05D001660 ORTHO05D003277 1.4e-24 117.5 199 36.2
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 1.4e-24 117.5 195 33.8
Lj4g0007113 Lotus japonicus HOM05D001660 ORTHO05D003277 1.8e-24 117.1 197 36.5
MD10G1046000 Malus domestica HOM05D001660 ORTHO05D003277 1.8e-24 117.1 195 35.4
CiPaw.09G158200 Carya illinoinensis HOM05D001660 ORTHO05D003277 2.3e-24 116.7 195 35.4
FvH4_3g04040 Fragaria vesca HOM05D001660 ORTHO05D003277 2.3e-24 116.7 195 35.9
FAN11G0361 Fragaria x ananassa HOM05D001660 ORTHO05D003277 2.3e-24 116.7 195 35.9
Lj1C1213G3 Lonicera japonica HOM05D001660 ORTHO05D003277 2.3e-24 116.7 202 35.1
Medtr4g091060 Medicago truncatula HOM05D001660 ORTHO05D003277 2.3e-24 116.7 199 36.7
RcHm_v2.0_Chr5g0006411 Rosa chinensis HOM05D001660 ORTHO05D003277 2.3e-24 116.7 195 35.9
AUR62019436 Chenopodium quinoa HOM05D001660 ORTHO05D003277 3.0e-24 116.3 195 33.8
Duzib235G1360 Durio zibethinus HOM05D001660 ORTHO05D003277 3.0e-24 116.3 192 35.4
Gohir.D05G168500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 3.0e-24 116.3 199 35.7
Potri.005G183400 Populus trichocarpa HOM05D001660 ORTHO05D003277 3.0e-24 116.3 192 35.9
Cc02_g12460 Coffea canephora HOM05D001660 ORTHO05D003277 4.0e-24 115.9 196 36.7
Glyma.07G190300 Glycine max HOM05D001660 ORTHO05D003277 4.0e-24 115.9 195 35.9
Sp7g19590 Schrenkiella parvula HOM05D001660 ORTHO05D003277 4.0e-24 115.9 197 36.5
Thecc.06G198900 Theobroma cacao HOM05D001660 ORTHO05D003277 4.0e-24 115.9 199 35.7
Potri.002G077200 Populus trichocarpa HOM05D001660 ORTHO05D003277 5.2e-24 115.5 195 34.9
RcHm_v2.0_Chr5g0006511 Rosa chinensis HOM05D001660 ORTHO05D003277 5.2e-24 115.5 195 35.9
A01p12790 Brassica napus HOM05D001660 ORTHO05D003277 6.7e-24 115.2 195 35.4
Eucgr.G00852 Eucalyptus grandis HOM05D001660 ORTHO05D003277 6.7e-24 115.2 199 37.7
Lalb_Chr09g0327381 Lupinus albus HOM05D001660 ORTHO05D003277 6.7e-24 115.2 196 35.7
BcaC09g51218 Brassica carinata HOM05D001660 ORTHO05D003277 8.8e-24 114.8 195 35.4
BcaNung02795 Brassica carinata HOM05D001660 ORTHO05D003277 8.8e-24 114.8 195 35.4
Lalb_Chr05g0218171 Lupinus albus HOM05D001660 ORTHO05D003277 8.8e-24 114.8 196 36.7
PSO541G0051 Papaver somniferum HOM05D001660 ORTHO05D003277 8.8e-24 114.8 196 34.7
CAN.G424.10 Capsicum annuum HOM05D001660 ORTHO05D003277 1.1e-23 114.4 195 35.9
AUR62039196 Chenopodium quinoa HOM05D001660 ORTHO05D003277 1.1e-23 114.4 195 33.8
CsaV3_1G011810 Cucumis sativus L. HOM05D001660 ORTHO05D003277 1.1e-23 114.4 196 34.7
MBI10_g16793_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D003277 1.1e-23 114.4 195 35.4
Aa31LG6G3480 Aethionema arabicum HOM05D001660 ORTHO05D003277 1.5e-23 114.0 195 34.9
MELO3C002558.2 Cucumis melo HOM05D001660 ORTHO05D003277 1.5e-23 114.0 196 34.2
Thhalv10025469m.g Eutrema salsugineum HOM05D001660 ORTHO05D003277 1.5e-23 114.0 195 36.9
Nn1g03908 Nelumbo nucifera HOM05D001660 ORTHO05D003277 1.5e-23 114.0 202 34.2
Psat5g291880 Pisum sativum HOM05D001660 ORTHO05D003277 1.5e-23 114.0 199 36.2
Psat7g108520 Pisum sativum HOM05D001660 ORTHO05D003277 1.5e-23 114.0 199 36.7
Sabra02G0060700 Salix brachista HOM05D001660 ORTHO05D003277 1.5e-23 114.0 195 34.9
C01p15390 Brassica napus HOM05D001660 ORTHO05D003277 2.0e-23 113.6 195 35.4
BolC1t01493H Brassica oleracea HOM05D001660 ORTHO05D003277 2.0e-23 113.6 195 35.4
Sabra05G0138900 Salix brachista HOM05D001660 ORTHO05D003277 2.6e-23 113.2 192 35.9
BraA01t01222Z Brassica rapa HOM05D001660 ORTHO05D003277 3.3e-23 112.8 195 34.9
CSS0023132 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 3.3e-23 112.8 202 34.2
AagrBONN_evm.TU.Sc2ySwM_117.1987 Anthoceros agrestis HOM05D001660 ORTHO05D003277 4.4e-23 112.5 195 34.4
CARHR228140 Cardamine hirsuta HOM05D001660 ORTHO05D003277 4.4e-23 112.5 195 36.4
Ca_18484_v3 Cicer arietinum L. HOM05D001660 ORTHO05D003277 4.4e-23 112.5 199 36.7
DCAR_004137 Daucus carota HOM05D001660 ORTHO05D003277 4.4e-23 112.5 202 34.7
Migut.I00194 Erythranthe guttata HOM05D001660 ORTHO05D003277 4.4e-23 112.5 196 34.7
unitig_749.g14095 Utricularia gibba HOM05D001660 ORTHO05D003277 4.4e-23 112.5 197 35.5
MSTRG.8638 Avicennia marina HOM05D001660 ORTHO05D003277 5.7e-23 112.1 197 34.5
VMungo0251G1038 Vigna mungo HOM05D001660 ORTHO05D003277 5.7e-23 112.1 199 35.2
AUR62014720 Chenopodium quinoa HOM05D001660 ORTHO05D003277 7.5e-23 111.7 194 33.5
TPR.G36995 Trifolium pratense HOM05D001660 ORTHO05D003277 7.5e-23 111.7 196 35.2
PSO832G0018 Papaver somniferum HOM05D001660 ORTHO05D003277 1.3e-22 110.9 196 34.2
QL04p018339 Quercus lobata HOM05D001660 ORTHO05D003277 1.3e-22 110.9 202 34.2
Aqoxy2G02549 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 2.2e-22 110.2 195 33.8
Pp3c14_9170 Physcomitrium patens HOM05D001660 ORTHO05D003277 2.2e-22 110.2 197 33.0
Rhsim13G0170300 Rhododendron simsii HOM05D001660 ORTHO05D003277 2.8e-22 109.8 210 33.8
Aqoxy5G02848 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 4.8e-22 109.0 197 33.0
Atru.chr10.2005 Acer truncatum HOM05D001660 ORTHO05D003277 6.3e-22 108.6 195 33.8
Glyma.08G058800 Glycine max HOM05D001660 ORTHO05D003277 6.3e-22 108.6 199 35.7
HanXRQChr04g0124591 Helianthus annuus HOM05D001660 ORTHO05D003277 6.3e-22 108.6 194 33.5
THA.LOC104812699 Tarenaya hassleriana HOM05D001660 ORTHO05D003277 6.3e-22 108.6 202 33.2
TWI38G0734 Tripterygium wilfordii HOM05D001660 ORTHO05D003277 6.3e-22 108.6 195 33.8
Cfa000356 Carpinus fangiana HOM05D001660 ORTHO05D003277 8.2e-22 108.2 195 33.8
Mapoly0005s0066 Marchantia polymorpha HOM05D001660 ORTHO05D003277 1.1e-21 107.8 195 33.8
PSO210G1142 Papaver somniferum HOM05D001660 ORTHO05D003277 1.1e-21 107.8 188 35.1
ATR0787G139 Amborella trichopoda HOM05D001660 ORTHO05D003277 1.4e-21 107.5 195 32.3
Cre06.g311600 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D003277 1.4e-21 107.5 215 33.0
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.4e-21 107.5 194 32.5
AagrBONN_evm.TU.Sc2ySwM_117.1412 Anthoceros agrestis HOM05D001660 ORTHO05D003277 2.4e-21 106.7 195 33.8
SMO174G0108 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 2.4e-21 106.7 195 33.3
Hma1.2p1_0144F.1_g064640 Hydrangea macrophylla HOM05D001660 ORTHO05D003277 4.1e-21 105.9 195 33.3
Ah.09g236120 Amaranthus hybridus HOM05D001660 ORTHO05D003277 5.3e-21 105.5 187 32.6
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 9.1e-21 104.8 184 35.3
Lsat_1_v5_gn_7_19661 Lactuca sativa HOM05D001660 ORTHO05D003277 1.6e-20 104.0 194 33.0
Migut.M01210 Erythranthe guttata HOM05D001660 ORTHO05D003277 2.9e-19 99.8 195 31.8
RcHm_v2.0_Chr5g0006461 Rosa chinensis HOM05D001660 ORTHO05D003277 4.7e-17 92.4 195 30.8
ClCG03G005540 Citrullus lanatus HOM05D001660 ORTHO05D003277 8.0e-17 91.7 199 29.1
Cre01.g025250 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D044326 1.8e-16 90.5 194 30.4
Dinv40484 Davidia involucrata HOM05D001660 ORTHO05D003277 2.3e-16 90.1 84 46.4
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 1.2e-15 87.8 186 31.2
TPR.G17001 Trifolium pratense HOM05D001660 ORTHO05D003277 2.6e-15 86.7 187 32.1
HanXRQChr09g0263881 Helianthus annuus HOM05D001660 ORTHO05D003277 5.7e-15 85.5 194 30.4
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 5.7e-15 85.5 186 32.8
HanXRQChr05g0131491 Helianthus annuus HOM05D001660 ORTHO05D003277 1.3e-14 84.3 85 44.7
Nitab4.5_0001967g0010 Nicotiana tabacum HOM05D001660 ORTHO05D003277 1.7e-14 84.0 87 42.5
arahy.Tifrunner.gnm1.ann1.SD5K22 Arachis hypogaea HOM05D001660 ORTHO05D003277 2.8e-14 83.2 76 48.7
arahy.Tifrunner.gnm1.ann1.8P7H9A Arachis hypogaea HOM05D001660 ORTHO05D003277 3.7e-14 82.8 76 50.0
Haze_06570 Corylus avellana HOM05D001660 ORTHO05D003277 4.8e-14 82.4 195 29.7
PRCOL_00004799 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 5.4e-13 79.0 199 28.1
SMO201G0196 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 9.1e-13 78.2 89 41.6
Actinidia05574 Actinidia chinensis HOM05D001660 ORTHO05D003277 1.1e-10 71.2 105 34.3
RcHm_v2.0_Chr5g0006481 Rosa chinensis HOM05D001660 ORTHO05D003277 6.1e-09 65.5 195 27.7
CDE02G1461 Ceratophyllum demersum HOM05D001660 ORTHO05D003277 5.2e-08 62.4 129 33.3
vmacro03812 Vaccinium macrocarpon HOM05D001660 ORTHO05D003277 6.8e-08 62.0 129 31.0
RcHm_v2.0_Chr5g0006401 Rosa chinensis HOM05D001660 ORTHO05D003277 8.8e-08 61.6 70 40.0
SGA_v2.0_scaffold7G03952 Striga asiatica HOM05D001660 ORTHO05D003277 2.6e-07 60.1 69 42.0
Nn1g06756 Nelumbo nucifera HOM05D001660 ORTHO05D003277 3.4e-07 59.7 52 57.7
HPP92_027184 Vanilla planifolia HOM05D001660 ORTHO05D003277 7.5e-07 58.5 66 39.4
AUR62016900 Chenopodium quinoa HOM05D001660 ORTHO05D003277 1.3e-06 57.8 46 45.7


User provided reference genes

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