Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 3.2e-268 927.9 507 100.0
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 6.0e-12 76.6 362 29.8
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.7e-11 75.1 361 29.6
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 5.0e-11 73.6 350 29.7
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 8.6e-11 72.8 371 29.4
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 3.3e-10 70.9 375 27.5
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 4.3e-10 70.5 357 27.7
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.3e-10 70.5 378 28.6
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 7.3e-10 69.7 325 28.9
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 1.2e-09 68.9 298 28.9
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 2.1e-09 68.2 299 31.8
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.8e-09 67.8 367 27.0
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 3.6e-09 67.4 349 27.5
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 4.7e-09 67.0 302 27.8
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 8.1e-09 66.2 325 28.0
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 8.1e-09 66.2 322 28.9
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 8.1e-09 66.2 324 28.1
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 8.1e-09 66.2 308 27.3
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 1.1e-08 65.9 311 30.2
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 1.4e-08 65.5 299 30.8
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 1.4e-08 65.5 299 30.8
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 1.8e-08 65.1 298 29.2
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 1.8e-08 65.1 327 27.5
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 2.3e-08 64.7 341 27.9
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 2.3e-08 64.7 328 29.0
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.3e-08 64.7 326 27.6
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 3.1e-08 64.3 328 26.5
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 3.1e-08 64.3 328 28.7
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 4.0e-08 63.9 340 27.6
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 4.0e-08 63.9 322 28.6
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 4.0e-08 63.9 322 27.6
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 4.0e-08 63.9 329 26.4
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 4.0e-08 63.9 311 27.3
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 5.2e-08 63.5 328 29.0
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 8.9e-08 62.8 414 28.7
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 8.9e-08 62.8 321 26.5
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 8.9e-08 62.8 309 26.5
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 1.2e-07 62.4 393 28.8
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 1.2e-07 62.4 328 26.5
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 1.2e-07 62.4 303 28.7
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.2e-07 62.4 362 27.1
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.5e-07 62.0 363 27.3
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.5e-07 62.0 327 27.5
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 2.0e-07 61.6 303 26.4
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 2.0e-07 61.6 337 25.5
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.0e-07 61.6 309 26.9
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 2.0e-07 61.6 324 27.8
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 2.0e-07 61.6 325 26.2
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 3.4e-07 60.8 313 27.5
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.4e-07 60.8 306 28.1
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 4.4e-07 60.5 324 26.9
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 4.4e-07 60.5 315 28.3
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 5.8e-07 60.1 306 26.8
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 7.5e-07 59.7 328 25.9
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 9.8e-07 59.3 298 26.5
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.3e-06 58.9 372 26.1
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 1.7e-06 58.5 323 26.6
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.7e-06 58.5 349 27.5
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.2e-06 58.2 329 26.7
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 2.2e-06 58.2 327 26.0
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 2.9e-06 57.8 329 26.7
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 2.9e-06 57.8 346 28.3
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.9e-06 57.8 236 27.1
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 3.7e-06 57.4 298 26.2
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 3.7e-06 57.4 322 26.7
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 4.9e-06 57.0 329 27.4
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 6.4e-06 56.6 101 34.7
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 8.3e-06 56.2 374 26.5


User provided reference genes

Program Settings