Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 0.0e+00 1331.6 679 100.0
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.6e-57 228.4 491 32.6
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.0e-27 127.9 229 35.8
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.4e-24 119.0 276 30.1
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 7.0e-24 116.7 227 33.0
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 7.0e-24 116.7 228 33.3
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.0e-23 115.2 234 32.5
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.5e-23 114.0 249 30.1
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.5e-23 114.0 216 33.8
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 5.9e-23 113.6 229 31.9
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.0e-22 112.8 253 33.2
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.9e-22 111.3 312 29.8
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.8e-22 110.9 252 31.3
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 1.1e-21 109.4 253 30.4
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.5e-21 109.0 230 31.7
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.9e-21 108.6 230 31.7
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 2.5e-21 108.2 230 31.7
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 2.5e-21 108.2 264 29.5
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.2e-21 107.8 252 29.8
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 3.2e-21 107.8 229 31.4
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 5.5e-21 107.1 281 29.2
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 7.2e-21 106.7 253 31.6
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 7.2e-21 106.7 222 33.3
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 9.4e-21 106.3 250 30.4
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 1.2e-20 105.9 288 29.2
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.2e-20 105.9 276 29.3
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 2.1e-20 105.1 292 28.4
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 3.6e-20 104.4 291 27.1
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 3.6e-20 104.4 232 29.7
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 3.6e-20 104.4 277 28.2
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 3.6e-20 104.4 291 29.6
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.7e-20 104.0 229 31.4
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 4.7e-20 104.0 247 30.8
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 6.1e-20 103.6 251 29.5
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 8.0e-20 103.2 230 30.9
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 8.0e-20 103.2 294 29.6
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.0e-19 102.8 250 30.4
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.0e-19 102.8 252 30.6
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.0e-19 102.8 243 30.0
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.4e-19 102.4 286 28.7
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 1.4e-19 102.4 286 28.7
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.8e-19 102.1 148 42.6
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 1.8e-19 102.1 229 31.0
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.8e-19 102.1 252 30.2
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.8e-19 102.1 229 30.6
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 1.8e-19 102.1 224 32.1
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 2.3e-19 101.7 227 31.7
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.3e-19 101.7 293 29.0
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 2.3e-19 101.7 293 28.7
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.3e-19 101.7 291 27.1
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 3.0e-19 101.3 227 31.7
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 3.0e-19 101.3 227 31.7
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 3.0e-19 101.3 227 31.7
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 3.0e-19 101.3 227 31.7
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 3.0e-19 101.3 227 31.7
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.0e-19 101.3 222 32.4
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 3.0e-19 101.3 293 28.3
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 3.0e-19 101.3 243 29.2
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 3.0e-19 101.3 265 30.6
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 4.0e-19 100.9 213 32.4
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 4.0e-19 100.9 213 31.9
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 4.0e-19 100.9 213 31.5
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.0e-19 100.9 214 31.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 5.2e-19 100.5 229 28.4
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 5.2e-19 100.5 232 29.3
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 5.2e-19 100.5 213 33.3
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 5.2e-19 100.5 221 29.4
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 5.2e-19 100.5 230 30.4
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 6.7e-19 100.1 222 32.0
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 6.7e-19 100.1 222 32.0
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 6.7e-19 100.1 222 32.0
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 6.7e-19 100.1 296 29.7
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 8.8e-19 99.8 213 31.9
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 8.8e-19 99.8 213 32.9
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 8.8e-19 99.8 213 32.9
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 8.8e-19 99.8 294 27.6
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.1e-18 99.4 222 32.0
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.1e-18 99.4 297 29.0
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 1.5e-18 99.0 290 27.9
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.5e-18 99.0 228 31.6
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.5e-18 99.0 228 31.6
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.5e-18 99.0 213 31.9
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.0e-18 98.6 229 28.4
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 2.0e-18 98.6 228 31.6
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 2.0e-18 98.6 293 27.6
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 2.6e-18 98.2 222 32.4
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 2.6e-18 98.2 222 32.4
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 2.6e-18 98.2 222 32.4
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 2.6e-18 98.2 213 32.4
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 3.3e-18 97.8 222 32.4
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 3.3e-18 97.8 222 32.4
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 3.3e-18 97.8 227 31.3
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 4.4e-18 97.4 213 31.9
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 4.4e-18 97.4 293 28.0
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 4.4e-18 97.4 213 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 5.7e-18 97.1 154 34.4
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 5.7e-18 97.1 222 32.0
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 7.5e-18 96.7 222 32.4
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 9.7e-18 96.3 219 31.5
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.3e-17 95.9 215 31.2
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.3e-17 95.9 207 31.9
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.7e-17 95.5 213 32.4
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.2e-17 95.1 213 31.5
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 6.3e-17 93.6 251 27.9
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 8.2e-17 93.2 205 31.7
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 8.2e-17 93.2 253 26.9
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.8e-16 92.0 203 30.5
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 2.4e-16 91.7 219 29.2
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 5.3e-16 90.5 176 31.2
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 1.2e-15 89.4 236 27.1
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.2e-15 89.4 229 28.8
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.2e-15 89.4 190 32.1
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 2.7e-15 88.2 138 37.0
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.7e-15 88.2 236 28.4
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.7e-14 85.5 243 28.0
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 2.2e-14 85.1 210 31.0
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 2.2e-14 85.1 253 29.6
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.9e-14 84.7 230 27.8
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.9e-14 84.7 230 27.8
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.8e-14 84.3 232 28.4
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.5e-13 82.4 232 28.4
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.9e-13 82.0 292 26.0
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 2.5e-13 81.6 158 32.9
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 4.2e-13 80.9 218 31.2
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 5.5e-13 80.5 249 26.9
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 9.4e-13 79.7 250 27.6
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.2e-12 79.3 132 36.4
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.6e-12 79.0 129 35.7
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.6e-12 79.0 291 26.1
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 2.1e-12 78.6 242 29.3
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 3.6e-12 77.8 275 27.3
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 8.0e-12 76.6 212 30.7
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 8.0e-12 76.6 138 34.1
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 8.0e-12 76.6 289 25.3
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.4e-11 75.9 232 28.0
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.3e-11 75.1 128 35.9
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.0e-10 72.0 231 28.1
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 7.5e-10 70.1 187 28.3
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 3.7e-09 67.8 153 32.0
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.7e-09 67.8 222 24.3
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.8e-08 65.5 176 32.4
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.8e-08 65.5 100 37.0
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 5.4e-08 63.9 208 24.5
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 5.4e-08 63.9 126 34.1
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.0e-08 63.5 231 26.4
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.2e-07 62.8 209 28.2
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.0e-07 62.0 166 29.5
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.5e-07 61.2 136 31.6
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 3.5e-07 61.2 160 28.8
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 4.5e-07 60.8 181 26.5
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 6.5e-06 57.0 159 28.3


User provided reference genes

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