Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 3108.5 1571 100.0
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 1.3e-185 655.2 1651 31.2
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 4.8e-185 653.3 1374 34.1
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 4.2e-181 640.2 1634 31.3
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 1.5e-178 631.7 1393 32.9
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 2.0e-175 621.3 1389 32.8
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 2.0e-175 621.3 1645 31.5
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 3.4e-175 620.5 1368 33.3
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 1.7e-174 618.2 1632 29.7
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 3.8e-174 617.1 1626 30.3
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 3.8e-174 617.1 1653 29.9
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 1.4e-173 615.1 1401 32.3
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 3.2e-173 614.0 1650 30.3
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 5.5e-173 613.2 1633 29.5
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 9.3e-173 612.5 1645 29.8
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 2.7e-172 610.9 1612 29.7
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 3.6e-172 610.5 1602 29.7
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 4.6e-172 610.1 1345 31.9
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 2.3e-171 607.8 1682 30.1
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 5.1e-171 606.7 1655 29.7
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 5.1e-171 606.7 1373 32.5
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 5.1e-171 606.7 1674 30.2
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 1.1e-170 605.5 1642 29.6
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 4.3e-170 603.6 1652 29.4
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 4.3e-170 603.6 1614 29.5
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 4.3e-170 603.6 1353 31.9
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 5.7e-170 603.2 1609 29.8
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 1.3e-169 602.1 1621 30.1
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 1.1e-168 599.0 1364 31.8
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 1.4e-168 598.6 1656 29.2
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 4.1e-168 597.0 1376 31.4
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 4.1e-168 597.0 1388 31.9
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 6.9e-168 596.3 1402 32.7
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 1.2e-167 595.5 1667 28.9
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 1.2e-167 595.5 1362 31.4
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.2e-167 595.5 1642 30.0
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 1.2e-167 595.5 1360 32.1
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 1.5e-167 595.1 1660 29.8
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 2.0e-167 594.7 1392 31.2
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 2.0e-167 594.7 1638 29.7
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 2.0e-167 594.7 1407 30.8
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 2.0e-167 594.7 1655 29.8
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 3.4e-167 594.0 1678 29.7
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 4.5e-167 593.6 1413 32.0
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 1.0e-166 592.4 1334 31.6
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 1.0e-166 592.4 1421 31.9
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 2.2e-166 591.3 1353 32.6
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 2.2e-166 591.3 1661 29.7
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 2.9e-166 590.9 1408 31.3
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 5.0e-166 590.1 1408 31.0
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 6.5e-166 589.7 1635 29.7
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 8.5e-166 589.3 1288 32.7
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 1.9e-165 588.2 1636 28.9
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 2.5e-165 587.8 1401 32.2
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 9.4e-165 585.9 1340 32.3
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.2e-164 585.5 1363 32.3
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.7e-164 584.3 1365 31.9
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 2.7e-164 584.3 1394 31.6
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 2.7e-164 584.3 1373 31.5
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 3.6e-164 583.9 1407 31.1
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 1.0e-163 582.4 1402 31.4
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 1.0e-163 582.4 1666 30.0
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 1.8e-163 581.6 1347 32.6
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 1.8e-163 581.6 1405 31.8
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 5.1e-163 580.1 1361 31.4
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 5.1e-163 580.1 1383 33.3
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 6.7e-163 579.7 1387 30.9
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 8.8e-163 579.3 1624 29.0
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 8.8e-163 579.3 1347 33.0
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.1e-162 578.9 1393 31.7
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 2.0e-162 578.2 1356 32.0
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 2.6e-162 577.8 1366 32.1
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 2.6e-162 577.8 1393 31.9
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 4.4e-162 577.0 1407 31.0
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 5.7e-162 576.6 1300 32.2
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 7.4e-162 576.2 1408 31.8
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 2.2e-161 574.7 1673 29.2
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 2.8e-161 574.3 1714 28.9
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 6.3e-161 573.2 1644 29.1
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 6.3e-161 573.2 1352 32.2
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 8.2e-161 572.8 1355 31.7
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 6.9e-160 569.7 1421 31.7
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.5e-159 568.5 1652 29.1
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 2.0e-159 568.2 1439 30.5
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 6.5e-158 563.1 1378 31.9
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.1e-157 562.4 1631 29.1
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 1.1e-157 562.4 1406 29.9
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 2.5e-157 561.2 1648 29.2
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 2.1e-156 558.1 1367 31.2
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 1.5e-154 552.0 1334 31.9
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 1.7e-153 548.5 1355 31.1
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 2.7e-148 531.2 1506 29.4
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 1.7e-145 521.9 1341 30.9
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 2.8e-145 521.2 681 44.3
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 3.1e-144 517.7 1602 28.0
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 9.1e-144 516.2 735 41.0
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 1.9e-141 508.4 1349 31.1
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 4.2e-141 507.3 690 41.3
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 1.6e-140 505.4 627 45.1
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 3.6e-140 504.2 1319 30.3
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 5.2e-139 500.4 678 42.2
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 4.4e-138 497.3 1518 28.5
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 8.3e-137 493.0 1429 29.0
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 9.5e-133 479.6 1295 30.2
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 3.6e-132 477.6 536 48.3
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 2.6e-122 444.9 1722 26.1
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 5.0e-118 430.6 597 41.7
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 1.7e-105 389.0 1358 27.1
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 5.6e-101 374.0 300 59.7
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.4e-96 358.6 252 64.3
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 5.1e-94 350.9 246 63.8
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 3.3e-93 348.2 246 63.4
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 1.8e-91 342.4 1305 27.4
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 2.4e-91 342.0 1671 24.8
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 1.5e-82 312.8 261 57.5
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 8.4e-81 307.0 967 27.3
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 1.0e-78 300.1 204 67.6
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 1.5e-74 286.2 733 29.7
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 1.6e-71 276.2 270 51.1
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 5.3e-67 261.2 471 35.2
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 8.4e-65 253.8 214 55.6
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 4.6e-55 221.5 1294 22.3
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 3.0e-38 165.6 120 63.3
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.6e-31 143.3 246 35.4
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 2.6e-29 136.0 102 62.7
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 1.7e-25 123.2 84 65.5
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 1.9e-24 119.8 358 27.4
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 1.9e-24 119.8 296 29.4
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 1.3e-20 107.1 519 23.9
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 1.1e-19 104.0 492 23.0
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 3.5e-18 99.0 72 61.1
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 5.9e-18 98.2 103 48.5
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 7.7e-18 97.8 565 21.4
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 1.0e-17 97.4 372 23.9
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 8.6e-17 94.4 103 49.5
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 1.1e-16 94.0 268 27.6
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 9.5e-16 90.9 297 26.3
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 8.0e-15 87.8 305 26.6
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 3.0e-14 85.9 58 63.8
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 4.0e-14 85.5 266 25.6
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 8.9e-14 84.3 53 69.8
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 2.2e-12 79.7 58 56.9
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 1.0e-09 70.9 88 42.0
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 5.6e-08 65.1 88 39.8
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 1.2e-07 63.9 66 50.0
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 1.6e-07 63.5 57 49.1
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 6.1e-07 61.6 195 24.1
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 4.0e-06 58.9 57 47.4


User provided reference genes

Program Settings