Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024897 Carpinus fangiana HOM05D002832 ORTHO05D125146 3.5e-241 837.8 407 100.0
Atru.chr12.1777 Acer truncatum HOM05D002832 ORTHO05D007530 1.9e-16 91.3 284 28.2
Atru.chr1.2735 Acer truncatum HOM05D002832 ORTHO05D007530 7.1e-16 89.4 284 28.2
CAN.G1459.11 Capsicum annuum HOM05D002832 ORTHO05D008667 1.2e-15 88.6 308 26.0
Haze_04139 Corylus avellana HOM05D002832 ORTHO05D008667 1.6e-15 88.2 291 26.1
Sabra11G0131700 Salix brachista HOM05D002832 ORTHO05D007530 2.1e-15 87.8 280 28.6
Hund19672 Selenicereus undatus HOM05D002832 ORTHO05D007530 3.5e-15 87.0 292 25.7
HanXRQChr09g0258991 Helianthus annuus HOM05D002832 ORTHO05D007530 4.6e-15 86.7 279 25.4
Solyc01g099710.4 Solanum lycopersicum HOM05D002832 ORTHO05D008667 4.6e-15 86.7 301 25.9
PGSC0003DMG400024711 Solanum tuberosum HOM05D002832 ORTHO05D008667 4.6e-15 86.7 301 25.9
TWI75G1807 Tripterygium wilfordii HOM05D002832 ORTHO05D007530 1.8e-14 84.7 282 26.2
AT3G05510 Arabidopsis thaliana HOM05D002832 ORTHO05D008667 3.0e-14 84.0 291 26.1
MELO3C015307.2 Cucumis melo HOM05D002832 ORTHO05D008667 3.9e-14 83.6 289 24.9
CANSAT54G0675 Cannabis sativa HOM05D002832 ORTHO05D008667 5.1e-14 83.2 291 25.8
CsaV3_1G038830 Cucumis sativus L. HOM05D002832 ORTHO05D008667 5.1e-14 83.2 289 24.6
CBR_g30126 Chara braunii HOM05D002832 ORTHO05D007530 1.1e-13 82.0 271 24.4
Peaxi162Scf00037g01215 Petunia axillaris HOM05D002832 ORTHO05D008667 1.1e-13 82.0 301 24.9
Sed0016733 Sechium edule HOM05D002832 ORTHO05D008667 1.1e-13 82.0 292 24.7
AL3G16110 Arabidopsis lyrata HOM05D002832 ORTHO05D008667 1.5e-13 81.6 291 26.5
Aa31LG5G15880 Aethionema arabicum HOM05D002832 ORTHO05D008667 1.9e-13 81.3 291 26.5
BcaB04g19262 Brassica carinata HOM05D002832 ORTHO05D008667 1.9e-13 81.3 291 26.8
Carub.0003s0480 Capsella rubella HOM05D002832 ORTHO05D008667 1.9e-13 81.3 291 25.4
Gohir.A13G109400 Gossypium hirsutum HOM05D002832 ORTHO05D008667 1.9e-13 81.3 291 25.1
CiPaw.07G213600 Carya illinoinensis HOM05D002832 ORTHO05D007530 3.3e-13 80.5 275 25.8
THA.LOC104818717 Tarenaya hassleriana HOM05D002832 ORTHO05D008667 3.3e-13 80.5 291 26.1
Cfa006629 Carpinus fangiana HOM05D002832 ORTHO05D008667 4.3e-13 80.1 291 25.1
ClCG03G017130 Citrullus lanatus HOM05D002832 ORTHO05D008667 4.3e-13 80.1 289 24.2
Migut.K01159 Erythranthe guttata HOM05D002832 ORTHO05D007530 4.3e-13 80.1 265 27.2
Atru.chr2.30 Acer truncatum HOM05D002832 ORTHO05D008667 5.7e-13 79.7 292 24.7
Gohir.D13G112100 Gossypium hirsutum HOM05D002832 ORTHO05D008667 7.4e-13 79.3 346 23.4
Gorai.013G125800 Gossypium raimondii HOM05D002832 ORTHO05D008667 7.4e-13 79.3 346 23.4
Sp3g04340 Schrenkiella parvula HOM05D002832 ORTHO05D008667 7.4e-13 79.3 351 25.1
Thhalv10020802m.g Eutrema salsugineum HOM05D002832 ORTHO05D008667 9.6e-13 79.0 347 25.6
Lalb_Chr15g0077341 Lupinus albus HOM05D002832 ORTHO05D008667 9.6e-13 79.0 292 25.3
RcHm_v2.0_Chr1g0322141 Rosa chinensis HOM05D002832 ORTHO05D008667 9.6e-13 79.0 291 25.4
Sopen01g043230 Solanum pennellii HOM05D002832 ORTHO05D008667 1.3e-12 78.6 288 25.0
Thecc.05G313000 Theobroma cacao HOM05D002832 ORTHO05D008667 1.3e-12 78.6 346 24.3
CiPaw.07G021400 Carya illinoinensis HOM05D002832 ORTHO05D008667 1.6e-12 78.2 291 25.1
FvH4_6g06570 Fragaria vesca HOM05D002832 ORTHO05D008667 1.6e-12 78.2 291 25.4
FAN14G1300 Fragaria x ananassa HOM05D002832 ORTHO05D008667 1.6e-12 78.2 291 25.4
TWI36G1782 Tripterygium wilfordii HOM05D002832 ORTHO05D008667 1.6e-12 78.2 324 25.0
A03p34160 Brassica napus HOM05D002832 ORTHO05D008667 2.1e-12 77.8 291 25.1
C03p41550 Brassica napus HOM05D002832 ORTHO05D008667 2.1e-12 77.8 291 25.1
BolC3t16436H Brassica oleracea HOM05D002832 ORTHO05D008667 2.1e-12 77.8 291 25.1
BraA03t12590Z Brassica rapa HOM05D002832 ORTHO05D008667 2.1e-12 77.8 291 25.1
Lalb_Chr18g0045771 Lupinus albus HOM05D002832 ORTHO05D008667 2.1e-12 77.8 292 25.3
vmacro18484 Vaccinium macrocarpon HOM05D002832 ORTHO05D007530 2.1e-12 77.8 290 25.2
Duzib177G0088 Durio zibethinus HOM05D002832 ORTHO05D008667 2.8e-12 77.4 292 24.0
Hund21711 Selenicereus undatus HOM05D002832 ORTHO05D008667 2.8e-12 77.4 292 25.0
Hma1.2p1_1292F.1_g273740 Hydrangea macrophylla HOM05D002832 ORTHO05D008667 3.7e-12 77.0 286 25.2
Hma1.2p1_1292F.1_g273750 Hydrangea macrophylla HOM05D002832 ORTHO05D008667 3.7e-12 77.0 286 25.2
AUR62000763 Chenopodium quinoa HOM05D002832 ORTHO05D008667 4.8e-12 76.6 288 24.0
ECA240G0796 Erigeron canadensis HOM05D000021 ORTHO05D008667 4.8e-12 76.6 388 24.7
Lsat_1_v5_gn_9_124380 Lactuca sativa HOM05D002832 ORTHO05D008667 4.8e-12 76.6 292 25.0
Manes.01G158900 Manihot esculenta HOM05D002832 ORTHO05D007530 4.8e-12 76.6 279 26.5
Zm00001eb433110 Zea mays HOM05D002832 ORTHO05D007530 4.8e-12 76.6 288 25.0
COL.COLO4_10519 Corchorus olitorius HOM05D002832 ORTHO05D008667 6.2e-12 76.3 291 25.4
Sc09g0002950 Simmondsia chinensis HOM05D002832 ORTHO05D008667 6.2e-12 76.3 292 25.0
Aqoxy5G00732 Aquilegia oxysepala HOM05D002832 ORTHO05D008667 8.2e-12 75.9 290 24.1
Ciclev10001108m.g Citrus clementina HOM05D002832 ORTHO05D008667 1.1e-11 75.5 292 25.7
Manes.08G117500 Manihot esculenta HOM05D002832 ORTHO05D008667 1.4e-11 75.1 291 24.7
Cc02_g34140 Coffea canephora HOM05D002832 ORTHO05D008667 1.8e-11 74.7 291 24.4
PSO832G3525 Papaver somniferum HOM05D002832 ORTHO05D008667 1.8e-11 74.7 288 24.3
EL10Ac4g09915 Beta vulgaris HOM05D002832 ORTHO05D008667 2.4e-11 74.3 364 22.8
DCAR_022146 Daucus carota HOM05D002832 ORTHO05D008667 2.4e-11 74.3 292 24.7
Glyma.03G235600 Glycine max HOM05D002832 ORTHO05D008667 2.4e-11 74.3 292 25.3
Potri.005G025400 Populus trichocarpa HOM05D002832 ORTHO05D008667 2.4e-11 74.3 304 26.0
Glyma.19G233400 Glycine max HOM05D002832 ORTHO05D008667 3.1e-11 73.9 347 24.2
MD04G1200600 Malus domestica HOM05D002832 ORTHO05D008667 3.1e-11 73.9 291 24.4
Os01g0931300 Oryza sativa ssp. japonica HOM05D002832 ORTHO05D008667 3.1e-11 73.9 289 23.2
Sabra05G0030900 Salix brachista HOM05D002832 ORTHO05D008667 4.1e-11 73.6 304 26.0
VMungo0540G0719 Vigna mungo HOM05D002832 ORTHO05D008667 4.1e-11 73.6 292 25.0
MSTRG.27983 Avicennia marina HOM05D002832 ORTHO05D008667 5.3e-11 73.2 292 22.3
Phvul.006G089600 Phaseolus vulgaris HOM05D002832 ORTHO05D008667 5.3e-11 73.2 292 25.3
arahy.Tifrunner.gnm1.ann1.NSA13U Arachis hypogaea HOM05D002832 ORTHO05D008667 6.9e-11 72.8 356 23.9
Eucgr.B01913 Eucalyptus grandis HOM05D002832 ORTHO05D008667 6.9e-11 72.8 291 25.4
Lj5A420G19 Lonicera japonica HOM05D002832 ORTHO05D008667 6.9e-11 72.8 292 24.3
Ca_05799_v3 Cicer arietinum L. HOM05D002832 ORTHO05D008667 1.2e-10 72.0 357 23.0
PGR083G0155 Punica granatum HOM05D002832 ORTHO05D008667 1.2e-10 72.0 291 25.1
TPR.G33230 Trifolium pratense HOM05D002832 ORTHO05D008667 1.5e-10 71.6 291 23.7
Medtr7g112680 Medicago truncatula HOM05D002832 ORTHO05D008667 2.0e-10 71.2 355 22.8
Oeu043345.1 Olea europaea HOM05D002832 ORTHO05D008667 2.0e-10 71.2 292 23.3
Psat0s27g0040 Pisum sativum HOM05D002832 ORTHO05D008667 2.6e-10 70.9 353 22.7
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 2.6e-10 70.9 291 24.4
AUR62016259 Chenopodium quinoa HOM05D002832 ORTHO05D007530 4.5e-10 70.1 140 32.9
MSTRG.15608 Avicennia marina HOM05D002832 ORTHO05D007530 5.8e-10 69.7 273 24.9
FAN23G2263 Fragaria x ananassa HOM05D002832 ORTHO05D007530 7.6e-10 69.3 131 32.8
FAN26G3411 Fragaria x ananassa HOM05D002832 ORTHO05D007530 7.6e-10 69.3 131 32.8
TAR633G1988 Trochodendron aralioides HOM05D002832 ORTHO05D008667 7.6e-10 69.3 290 23.1
GSVIVG01031143001 Vitis vinifera HOM05D002832 ORTHO05D008667 7.6e-10 69.3 291 24.1
Dinv40338 Davidia involucrata HOM05D002832 ORTHO05D008667 1.3e-09 68.6 291 24.4
Nn4g25828 Nelumbo nucifera HOM05D002832 ORTHO05D008667 1.3e-09 68.6 350 22.6
RcHm_v2.0_Chr2g0096581 Rosa chinensis HOM05D002832 ORTHO05D007530 1.3e-09 68.6 131 34.4
Mapoly0006s0012 Marchantia polymorpha HOM05D002832 ORTHO05D007530 1.7e-09 68.2 130 32.3
CSS0017129 Camellia sinensis var. sinensis HOM05D002832 ORTHO05D008667 2.2e-09 67.8 288 24.3
FAN23G0606 Fragaria x ananassa HOM05D002832 ORTHO05D007530 2.2e-09 67.8 131 32.1
MBI18_g46421_MAGBIO Magnolia biondii HOM05D002832 ORTHO05D008667 2.9e-09 67.4 288 23.3
CANSAT64G0003 Cannabis sativa HOM05D002832 ORTHO05D007530 3.8e-09 67.0 130 32.3
MD02G1106200 Malus domestica HOM05D002832 ORTHO05D007530 3.8e-09 67.0 133 32.3
MD12G1213100 Malus domestica HOM05D002832 ORTHO05D008667 3.8e-09 67.0 291 23.0
Aa31LG4G2300 Aethionema arabicum HOM05D002832 ORTHO05D007530 5.0e-09 66.6 130 33.8
A02p22330 Brassica napus HOM05D002832 ORTHO05D007530 5.0e-09 66.6 128 32.8
A07p43940 Brassica napus HOM05D002832 ORTHO05D007530 5.0e-09 66.6 128 32.8
BraA02t07237Z Brassica rapa HOM05D002832 ORTHO05D007530 5.0e-09 66.6 128 32.8
CSS0001457 Camellia sinensis var. sinensis HOM05D002832 ORTHO05D008667 5.0e-09 66.6 288 24.0
Carub.0002s2555 Capsella rubella HOM05D002832 ORTHO05D007530 8.4e-09 65.9 126 34.1
FvH4_1g09860 Fragaria vesca HOM05D002832 ORTHO05D007530 8.4e-09 65.9 131 32.1
FAN28G1247 Fragaria x ananassa HOM05D002832 ORTHO05D007530 8.4e-09 65.9 131 32.1
Lsat_1_v5_gn_8_113701 Lactuca sativa HOM05D008006 ORTHO05D010181 8.4e-09 65.9 141 33.3
HPP92_011845 Vanilla planifolia HOM05D002832 ORTHO05D008667 8.4e-09 65.9 286 23.1
BcaB03g16027 Brassica carinata HOM05D002832 ORTHO05D007530 1.1e-08 65.5 128 32.8
C06p52570 Brassica napus HOM05D002832 ORTHO05D007530 1.1e-08 65.5 128 32.8
BolC6t40275H Brassica oleracea HOM05D003130 ORTHO05D007530 1.1e-08 65.5 128 32.8
BraA07t31901Z Brassica rapa HOM05D002832 ORTHO05D007530 1.1e-08 65.5 128 32.8
Thhalv10018972m.g Eutrema salsugineum HOM05D002832 ORTHO05D007530 1.1e-08 65.5 126 34.1
MD15G1226000 Malus domestica HOM05D002832 ORTHO05D007530 1.1e-08 65.5 135 31.9
SHI18105 Sapria himalayana HOM05D002832 ORTHO05D008667 1.1e-08 65.5 277 22.7
AT1G78690 Arabidopsis thaliana HOM05D002832 ORTHO05D007530 1.4e-08 65.1 126 33.3
Potri.011G146800 Populus trichocarpa HOM05D002832 ORTHO05D007530 1.4e-08 65.1 131 32.1
PRCOL_00004374 Prasinoderma coloniale HOM05D002832 ORTHO05D008667 1.4e-08 65.1 126 33.3
THA.LOC104812307 Tarenaya hassleriana HOM05D002832 ORTHO05D007530 1.4e-08 65.1 130 32.3
ATR0796G160 Amborella trichopoda HOM05D002832 ORTHO05D008667 1.9e-08 64.7 289 21.8
BcaB05g25152 Brassica carinata HOM05D002832 ORTHO05D007530 1.9e-08 64.7 128 32.0
BcaC03g15836 Brassica carinata HOM05D002832 ORTHO05D007530 1.9e-08 64.7 125 32.8
C02p35870 Brassica napus HOM05D002832 ORTHO05D007530 1.9e-08 64.7 125 32.8
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 2.5e-08 64.3 291 23.4
Prupe.7G189000 Prunus persica HOM05D002832 ORTHO05D007530 2.5e-08 64.3 133 32.3
CARHR079900 Cardamine hirsuta HOM05D002832 ORTHO05D008667 3.2e-08 63.9 119 31.1
CDE01G0580 Ceratophyllum demersum HOM05D002832 ORTHO05D008667 3.2e-08 63.9 289 23.2
Gohir.D08G007800 Gossypium hirsutum HOM05D002832 ORTHO05D007530 3.2e-08 63.9 127 33.1
Gorai.004G001000 Gossypium raimondii HOM05D002832 ORTHO05D007530 3.2e-08 63.9 127 33.1
MCO16G048 Micromonas commoda HOM05D002832 ORTHO05D007530 3.2e-08 63.9 353 23.8
Lj2C508G8 Lonicera japonica HOM05D002832 ORTHO05D007530 4.2e-08 63.5 129 32.6
BolC2t09600H Brassica oleracea HOM05D002832 ORTHO05D007530 5.5e-08 63.2 126 33.3
Gohir.A08G000048 Gossypium hirsutum HOM05D002832 ORTHO05D007530 5.5e-08 63.2 127 33.1
AL2G39090 Arabidopsis lyrata HOM05D002832 ORTHO05D007530 7.1e-08 62.8 126 32.5
Oeu025037.1 Olea europaea HOM05D002832 ORTHO05D007530 7.1e-08 62.8 129 34.1
Peaxi162Scf00981g00020 Petunia axillaris HOM05D002832 ORTHO05D007530 9.3e-08 62.4 131 32.1
Sp5g33750 Schrenkiella parvula HOM05D002832 ORTHO05D007530 9.3e-08 62.4 130 31.5
SpUn0074_0060 Schrenkiella parvula HOM05D002832 ORTHO05D007530 9.3e-08 62.4 130 31.5
AL262U10020 Arabidopsis lyrata HOM05D002832 ORTHO05D007530 1.2e-07 62.0 124 32.3
Gohir.D02G101400 Gossypium hirsutum HOM05D002832 ORTHO05D007530 1.2e-07 62.0 127 33.1
ATR0605G173 Amborella trichopoda HOM05D002832 ORTHO05D007530 2.1e-07 61.2 125 29.6
Haze_03290 Corylus avellana HOM05D002832 ORTHO05D007530 2.1e-07 61.2 131 33.6
Dinv19107 Davidia involucrata HOM05D008006 ORTHO05D007530 2.1e-07 61.2 128 34.4
Gorai.005G114800 Gossypium raimondii HOM05D002832 ORTHO05D007530 2.1e-07 61.2 125 32.8
PGR119G1364 Punica granatum HOM05D002832 ORTHO05D007530 2.1e-07 61.2 130 32.3
RcHm_v2.0_Chr3g0455731 Rosa chinensis HOM05D002832 ORTHO05D008667 2.1e-07 61.2 119 31.1
CDE12G0923 Ceratophyllum demersum HOM05D002832 ORTHO05D008667 2.7e-07 60.8 262 22.9
Ciclev10021568m.g Citrus clementina HOM05D002832 ORTHO05D007530 2.7e-07 60.8 131 34.4
ECA240G4732 Erigeron canadensis HOM05D002832 ORTHO05D007530 2.7e-07 60.8 127 34.6
Hma1.2p1_0085F.1_g044160 Hydrangea macrophylla HOM05D002832 ORTHO05D007530 2.7e-07 60.8 128 32.0
Nitab4.5_0000973g0050 Nicotiana tabacum HOM05D002832 ORTHO05D007530 2.7e-07 60.8 133 32.3
Os04g0667000 Oryza sativa ssp. japonica HOM05D002832 ORTHO05D007530 2.7e-07 60.8 131 30.5
Duzib147G1416 Durio zibethinus HOM05D002832 ORTHO05D007530 3.5e-07 60.5 127 33.1
FAN09G4081 Fragaria x ananassa HOM05D002832 ORTHO05D008667 4.6e-07 60.1 119 30.3
Thecc.01G000300 Theobroma cacao HOM05D002832 ORTHO05D007530 4.6e-07 60.1 127 31.5
Nitab4.5_0003844g0040 Nicotiana tabacum HOM05D002832 ORTHO05D008667 6.1e-07 59.7 120 29.2
arahy.Tifrunner.gnm1.ann1.6ZX6SY Arachis hypogaea HOM05D002832 ORTHO05D007530 1.0e-06 58.9 131 30.5
Lalb_Chr09g0334461 Lupinus albus HOM05D002832 ORTHO05D007530 1.0e-06 58.9 129 28.7
EL10Ac6g14726 Beta vulgaris HOM05D002832 ORTHO05D007530 1.3e-06 58.5 131 31.3
Eucgr.I02174 Eucalyptus grandis HOM05D002832 ORTHO05D007530 1.3e-06 58.5 129 31.8
Aqoxy5G00934 Aquilegia oxysepala HOM05D002832 ORTHO05D007530 1.8e-06 58.2 132 32.6
Migut.N02083 Erythranthe guttata HOM05D002832 ORTHO05D008667 1.8e-06 58.2 143 27.3
arahy.Tifrunner.gnm1.ann1.TB2NW7 Arachis hypogaea HOM05D002832 ORTHO05D007530 2.3e-06 57.8 131 29.8
CAN.G883.6 Capsicum annuum HOM05D002832 ORTHO05D007530 2.3e-06 57.8 127 30.7
MELO3C013700.2 Cucumis melo HOM05D002832 ORTHO05D007530 2.3e-06 57.8 167 29.9
CsaV3_3G000060 Cucumis sativus L. HOM05D002832 ORTHO05D007530 2.3e-06 57.8 141 31.9
Psat4g106840 Pisum sativum HOM05D002832 ORTHO05D007530 2.3e-06 57.8 131 28.2
Solyc02g068360.4 Solanum lycopersicum HOM05D002832 ORTHO05D007530 2.3e-06 57.8 127 30.7
Cc07_g12400 Coffea canephora HOM05D002832 ORTHO05D007530 3.0e-06 57.4 125 32.0
Lj4g0005122 Lotus japonicus HOM05D002832 ORTHO05D007530 3.0e-06 57.4 130 29.2
unitig_0.g2636 Utricularia gibba HOM05D002832 ORTHO05D007530 3.0e-06 57.4 126 31.0
Cre03.g182650 Chlamydomonas reinhardtii HOM05D002832 ORTHO05D008667 3.9e-06 57.0 103 33.0
PGSC0003DMG402009429 Solanum tuberosum HOM05D002832 ORTHO05D007530 3.9e-06 57.0 127 29.9
Glyma.09G195000 Glycine max HOM05D002832 ORTHO05D007530 5.1e-06 56.6 129 27.9
Sc03g0004220 Simmondsia chinensis HOM05D002832 ORTHO05D007530 5.1e-06 56.6 125 32.0
Nitab4.5_0003658g0050 Nicotiana tabacum HOM05D002832 ORTHO05D008667 6.7e-06 56.2 86 40.7
Phvul.003G279100 Phaseolus vulgaris HOM05D002832 ORTHO05D007530 6.7e-06 56.2 128 26.6
Ah.04g161120 Amaranthus hybridus HOM05D002832 ORTHO05D008667 8.7e-06 55.8 119 29.4
CANSAT78G0091 Cannabis sativa HOM05D002832 ORTHO05D007530 8.7e-06 55.8 126 31.7
SEGI_38140 Sequoiadendron giganteum HOM05D002832 ORTHO05D007530 8.7e-06 55.8 129 30.2
TAR381G1552 Trochodendron aralioides HOM05D002832 ORTHO05D007530 8.7e-06 55.8 92 39.1


User provided reference genes

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