Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024876 Carpinus fangiana HOM05D003398 ORTHO05D003867 9.6e-149 530.0 246 100.0
MCO04G143 Micromonas commoda HOM05D003398 ORTHO05D003867 6.9e-30 135.2 176 39.2
Os12g0288900 Oryza sativa ssp. japonica HOM05D003398 ORTHO05D003867 1.5e-29 134.0 167 41.9
Os04g0482700 Oryza sativa ssp. japonica HOM05D003398 ORTHO05D003867 4.9e-28 129.0 194 39.2
Aqoxy5G03632 Aquilegia oxysepala HOM05D003398 ORTHO05D003867 3.9e-25 119.4 162 37.7
Mapoly0024s0105 Marchantia polymorpha HOM05D003398 ORTHO05D003867 3.9e-25 119.4 189 34.9
Aqoxy3G02674 Aquilegia oxysepala HOM05D003398 ORTHO05D003867 1.1e-24 117.9 162 36.4
Lalb_Chr21g0317671 Lupinus albus HOM05D003398 ORTHO05D003867 1.1e-24 117.9 161 37.9
PRCOL_00006740 Prasinoderma coloniale HOM05D003398 ORTHO05D003867 1.5e-24 117.5 176 36.9
SalBow5G3830 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.9e-24 117.1 208 33.7
ECA232G2563 Erigeron canadensis HOM05D003398 ORTHO05D003867 2.5e-24 116.7 162 38.3
Zm00001eb079360 Zea mays HOM05D003398 ORTHO05D003867 2.5e-24 116.7 164 37.2
Lalb_Chr24g0403491 Lupinus albus HOM05D003398 ORTHO05D003867 3.3e-24 116.3 166 36.1
Pp3c20_19010 Physcomitrium patens HOM05D003398 ORTHO05D003867 3.3e-24 116.3 180 33.3
arahy.Tifrunner.gnm1.ann1.38E20H Arachis hypogaea HOM05D003398 ORTHO05D003867 4.3e-24 115.9 165 37.0
MSTRG.13012 Avicennia marina HOM05D003398 ORTHO05D003867 4.3e-24 115.9 166 39.2
Migut.E00642 Erythranthe guttata HOM05D003398 ORTHO05D003867 5.6e-24 115.5 164 36.0
arahy.Tifrunner.gnm1.ann1.BK7YP9 Arachis hypogaea HOM05D003398 ORTHO05D003867 7.3e-24 115.2 165 37.0
EL10Ac4g09990 Beta vulgaris HOM05D003398 ORTHO05D003867 9.6e-24 114.8 163 38.0
arahy.Tifrunner.gnm1.ann1.2ED5FZ Arachis hypogaea HOM05D003398 ORTHO05D003867 1.3e-23 114.4 165 37.0
Ciclev10016815m.g Citrus clementina HOM05D003398 ORTHO05D003867 1.6e-23 114.0 165 37.0
Duzib264G0135 Durio zibethinus HOM05D003398 ORTHO05D003867 1.6e-23 114.0 163 39.3
Lj7A603G63 Lonicera japonica HOM05D003398 ORTHO05D003867 1.6e-23 114.0 166 37.3
PSO478G3797 Papaver somniferum HOM05D003398 ORTHO05D003867 1.6e-23 114.0 166 38.0
QL02p073523 Quercus lobata HOM05D003398 ORTHO05D003867 2.1e-23 113.6 161 37.3
HanXRQChr07g0199121 Helianthus annuus HOM05D003398 ORTHO05D003867 2.8e-23 113.2 162 38.3
PSO017G4179 Papaver somniferum HOM05D003398 ORTHO05D003867 2.8e-23 113.2 166 38.0
arahy.Tifrunner.gnm1.ann1.0A6Q27 Arachis hypogaea HOM05D003398 ORTHO05D003867 3.6e-23 112.8 161 34.8
arahy.Tifrunner.gnm1.ann1.F3JNFU Arachis hypogaea HOM05D003398 ORTHO05D003867 3.6e-23 112.8 161 34.8
HanXRQChr15g0486781 Helianthus annuus HOM05D003398 ORTHO05D003867 3.6e-23 112.8 162 38.3
Nn8g40838 Nelumbo nucifera HOM05D003398 ORTHO05D003867 3.6e-23 112.8 165 37.6
SGA_v2.0_scaffold47G17675 Striga asiatica HOM05D003398 ORTHO05D003867 3.6e-23 112.8 162 35.2
Ah.05g175590 Amaranthus hybridus HOM05D003398 ORTHO05D003867 4.8e-23 112.5 163 36.8
CSS0009448 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 4.8e-23 112.5 166 39.2
CSS0035127 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 4.8e-23 112.5 166 39.2
Cc07_g00160 Coffea canephora HOM05D003398 ORTHO05D003867 4.8e-23 112.5 162 37.0
Eucgr.I01706 Eucalyptus grandis HOM05D003398 ORTHO05D003867 6.2e-23 112.1 162 36.4
Psat7g187560 Pisum sativum HOM05D003398 ORTHO05D003867 6.2e-23 112.1 162 36.4
Psat4g168600 Pisum sativum HOM05D003398 ORTHO05D003867 1.1e-22 111.3 163 35.0
SalBow1G3957 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.1e-22 111.3 161 35.4
Actinidia36143 Actinidia chinensis HOM05D003398 ORTHO05D003867 1.4e-22 110.9 162 37.0
FAN15G2381 Fragaria x ananassa HOM05D003398 ORTHO05D003867 1.4e-22 110.9 164 35.4
PGR142G0179 Punica granatum HOM05D003398 ORTHO05D003867 1.4e-22 110.9 162 36.4
Glyma.16G067200 Glycine max HOM05D003398 ORTHO05D003867 1.8e-22 110.5 164 34.8
Thecc.04G022800 Theobroma cacao HOM05D003398 ORTHO05D003867 1.8e-22 110.5 162 35.8
Atru.chr6.2457 Acer truncatum HOM05D003398 ORTHO05D003867 2.4e-22 110.2 165 37.0
MBI18_g30686_MAGBIO Magnolia biondii HOM05D003398 ORTHO05D003867 2.4e-22 110.2 165 37.0
SGA_v2.0_scaffold34G13651 Striga asiatica HOM05D003398 ORTHO05D003867 2.4e-22 110.2 162 35.8
Medtr4g052810 Medicago truncatula HOM05D003398 ORTHO05D003867 3.1e-22 109.8 162 34.6
Oeu050452.1 Olea europaea HOM05D003398 ORTHO05D003867 3.1e-22 109.8 162 37.0
TWI36G1734 Tripterygium wilfordii HOM05D003398 ORTHO05D003867 3.1e-22 109.8 127 39.4
TAR625G0506 Trochodendron aralioides HOM05D003398 ORTHO05D003867 3.1e-22 109.8 162 36.4
Medtr4g052800 Medicago truncatula HOM05D003398 ORTHO05D003867 4.0e-22 109.4 164 37.2
Rhsim08G0047400 Rhododendron simsii HOM05D003398 ORTHO05D003867 4.0e-22 109.4 165 36.4
TPR.G17224 Trifolium pratense HOM05D003398 ORTHO05D003867 4.0e-22 109.4 164 34.8
Aa31LG5G13920 Aethionema arabicum HOM05D003398 ORTHO05D003867 5.3e-22 109.0 162 35.8
Cfa007310 Carpinus fangiana HOM05D003398 ORTHO05D003867 5.3e-22 109.0 162 36.4
Ca_23690_v3 Cicer arietinum L. HOM05D003398 ORTHO05D003867 5.3e-22 109.0 162 35.2
FvH4_2g09970 Fragaria vesca HOM05D003398 ORTHO05D003867 5.3e-22 109.0 164 34.8
FAN20G3040 Fragaria x ananassa HOM05D003398 ORTHO05D003867 5.3e-22 109.0 164 34.8
FAN24G2305 Fragaria x ananassa HOM05D003398 ORTHO05D003867 5.3e-22 109.0 164 34.8
FAN27G1215 Fragaria x ananassa HOM05D003398 ORTHO05D003867 5.3e-22 109.0 164 34.8
Gohir.A07G224800 Gossypium hirsutum HOM05D003398 ORTHO05D003867 5.3e-22 109.0 163 37.4
Gohir.D07G232000 Gossypium hirsutum HOM05D003398 ORTHO05D003867 5.3e-22 109.0 163 37.4
Gorai.001G267200 Gossypium raimondii HOM05D003398 ORTHO05D003867 5.3e-22 109.0 163 37.4
vmacro05894 Vaccinium macrocarpon HOM05D003398 ORTHO05D003867 5.3e-22 109.0 162 37.7
vmacro18303 Vaccinium macrocarpon HOM05D003398 ORTHO05D003867 5.3e-22 109.0 162 35.2
RhsimUnG0005400 Rhododendron simsii HOM05D003398 ORTHO05D003867 6.9e-22 108.6 162 35.8
SalBow1G6722 Salvia bowleyana HOM05D003398 ORTHO05D003867 6.9e-22 108.6 162 34.6
SMO339G0056 Selaginella moellendorffii HOM05D003398 ORTHO05D003867 6.9e-22 108.6 163 35.6
BcaC09g47745 Brassica carinata HOM05D003398 ORTHO05D003867 9.0e-22 108.2 162 35.2
A06p26380 Brassica napus HOM05D003398 ORTHO05D003867 9.0e-22 108.2 162 35.2
BNapus_Darmor_BZH_scaffold_78p00130 Brassica napus HOM05D003398 ORTHO05D003867 9.0e-22 108.2 162 35.2
BolC1t05832H Brassica oleracea HOM05D003398 ORTHO05D003867 9.0e-22 108.2 162 35.2
BolC5t35005H Brassica oleracea HOM05D003398 ORTHO05D003867 9.0e-22 108.2 162 34.6
BraA01t04581Z Brassica rapa HOM05D003398 ORTHO05D003867 9.0e-22 108.2 162 35.2
Dinv33404 Davidia involucrata HOM05D003398 ORTHO05D003867 9.0e-22 108.2 165 36.4
Thhalv10021562m.g Eutrema salsugineum HOM05D003398 ORTHO05D003867 9.0e-22 108.2 162 35.2
Peaxi162Scf00418g00733 Petunia axillaris HOM05D003398 ORTHO05D003867 9.0e-22 108.2 162 34.6
RcHm_v2.0_Chr2g0173661 Rosa chinensis HOM05D003398 ORTHO05D003867 9.0e-22 108.2 164 35.4
AUR62034120 Chenopodium quinoa HOM05D003398 ORTHO05D003867 1.2e-21 107.8 165 37.0
MD15G1129500 Malus domestica HOM05D003398 ORTHO05D003867 1.2e-21 107.8 165 37.0
Solyc01g009443.1 Solanum lycopersicum HOM05D003398 ORTHO05D003867 1.2e-21 107.8 164 35.4
Sopen01g004980 Solanum pennellii HOM05D003398 ORTHO05D003867 1.2e-21 107.8 164 35.4
Lsat_1_v5_gn_4_184621 Lactuca sativa HOM05D003398 ORTHO05D003867 1.5e-21 107.5 162 34.6
Hund07917 Selenicereus undatus HOM05D003398 ORTHO05D003867 1.5e-21 107.5 162 35.2
THA.LOC104820837 Tarenaya hassleriana HOM05D003398 ORTHO05D003867 1.5e-21 107.5 162 34.0
AL3G13090 Arabidopsis lyrata HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 34.6
AT3G03420 Arabidopsis thaliana HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 34.6
BcaC05g30271 Brassica carinata HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 34.6
BNapus_Darmor_BZH_scaffold_162p00150 Brassica napus HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 34.6
CSS0037210 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 2.0e-21 107.1 165 36.4
Carub.0003s0256 Capsella rubella HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 34.6
Oeu054646.1 Olea europaea HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 34.6
Pp3c24_12610 Physcomitrium patens HOM05D003398 ORTHO05D003867 2.0e-21 107.1 181 32.6
Sp3g02420 Schrenkiella parvula HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 35.2
Hund13034 Selenicereus undatus HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 35.2
PGSC0003DMG400011703 Solanum tuberosum HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 33.3
THA.LOC104820838 Tarenaya hassleriana HOM05D003398 ORTHO05D003867 2.0e-21 107.1 162 33.3
TWI36G1505 Tripterygium wilfordii HOM05D003398 ORTHO05D003867 2.0e-21 107.1 125 38.4
C05p63410 Brassica napus HOM05D003398 ORTHO05D003867 2.6e-21 106.7 162 34.6
CAN.G1497.1 Capsicum annuum HOM05D003398 ORTHO05D003867 2.6e-21 106.7 162 33.3
CiPaw.03G047800 Carya illinoinensis HOM05D003398 ORTHO05D003867 2.6e-21 106.7 165 36.4
MD09G1020000 Malus domestica HOM05D003398 ORTHO05D003867 2.6e-21 106.7 165 36.4
Manes.15G154000 Manihot esculenta HOM05D003398 ORTHO05D003867 2.6e-21 106.7 162 35.2
Psat7g187520 Pisum sativum HOM05D003398 ORTHO05D003867 2.6e-21 106.7 162 35.2
RhsimUnG0088100 Rhododendron simsii HOM05D003398 ORTHO05D003867 2.6e-21 106.7 162 35.2
CAN.G386.27 Capsicum annuum HOM05D003398 ORTHO05D003867 3.4e-21 106.3 162 33.3
Sc18g0003950 Simmondsia chinensis HOM05D003398 ORTHO05D003867 3.4e-21 106.3 162 35.2
arahy.Tifrunner.gnm1.ann1.G39Z7R Arachis hypogaea HOM05D003398 ORTHO05D003867 4.5e-21 105.9 128 39.8
CDE07G0781 Ceratophyllum demersum HOM05D003398 ORTHO05D003867 5.8e-21 105.5 119 43.7
Prupe.3G296400 Prunus persica HOM05D003398 ORTHO05D003867 5.8e-21 105.5 163 36.2
Sabra16G0220000 Salix brachista HOM05D003398 ORTHO05D003867 5.8e-21 105.5 165 34.5
CARHR077440 Cardamine hirsuta HOM05D003398 ORTHO05D003867 7.6e-21 105.1 129 38.8
Aqoxy7G03969 Aquilegia oxysepala HOM05D003398 ORTHO05D003867 9.9e-21 104.8 119 42.0
CsaV3_5G026890 Cucumis sativus L. HOM05D003398 ORTHO05D003867 9.9e-21 104.8 165 35.2
GSVIVG01003986001 Vitis vinifera HOM05D003398 ORTHO05D003867 9.9e-21 104.8 165 35.8
Manes.17G109300 Manihot esculenta HOM05D003398 ORTHO05D003867 1.3e-20 104.4 118 40.7
A05p43830 Brassica napus HOM05D003398 ORTHO05D003867 1.7e-20 104.0 162 34.0
AUR62037710 Chenopodium quinoa HOM05D003398 ORTHO05D003867 1.7e-20 104.0 119 42.9
AUR62042865 Chenopodium quinoa HOM05D003398 ORTHO05D003867 1.7e-20 104.0 119 42.9
Lalb_Chr20g0109481 Lupinus albus HOM05D003398 ORTHO05D003867 2.2e-20 103.6 164 34.1
Potri.001G339900 Populus trichocarpa HOM05D003398 ORTHO05D003867 6.4e-20 102.1 118 39.8
COL.COLO4_29206 Corchorus olitorius HOM05D003398 ORTHO05D003867 8.4e-20 101.7 162 36.4
Lj1g0020548 Lotus japonicus HOM05D003398 ORTHO05D003867 8.4e-20 101.7 164 34.1
Duzib264G0348 Durio zibethinus HOM05D003398 ORTHO05D003867 1.1e-19 101.3 160 35.6
Lj2g0003632 Lotus japonicus HOM05D003398 ORTHO05D003867 1.1e-19 101.3 164 34.1
ClCG00G004890 Citrullus lanatus HOM05D003398 ORTHO05D003867 1.4e-19 100.9 118 39.8
ClCG09G019490 Citrullus lanatus HOM05D003398 ORTHO05D003867 1.4e-19 100.9 118 39.8
Sabra17G0099900 Salix brachista HOM05D003398 ORTHO05D003867 1.4e-19 100.9 118 39.8
Sabra17G0103200 Salix brachista HOM05D003398 ORTHO05D003867 1.4e-19 100.9 118 39.8
CANSAT21G2202 Cannabis sativa HOM05D003398 ORTHO05D003867 1.9e-19 100.5 118 40.7
BcaC05g30535 Brassica carinata HOM05D003398 ORTHO05D003867 2.4e-19 100.1 117 40.2
Potri.017G120800 Populus trichocarpa HOM05D003398 ORTHO05D003867 2.4e-19 100.1 118 39.8
BraA05t23120Z Brassica rapa HOM05D003398 ORTHO05D003867 4.2e-19 99.4 118 39.8
Nitab4.5_0002914g0030 Nicotiana tabacum HOM05D003398 ORTHO05D003867 5.4e-19 99.0 127 36.2
arahy.Tifrunner.gnm1.ann1.YDW0SS Arachis hypogaea HOM05D003398 ORTHO05D003867 7.1e-19 98.6 162 34.0
MELO3C021605.2 Cucumis melo HOM05D003398 ORTHO05D003867 7.1e-19 98.6 171 33.9
Sed0013516 Sechium edule HOM05D003398 ORTHO05D003867 9.3e-19 98.2 118 39.8
arahy.Tifrunner.gnm1.ann1.J4CY8C Arachis hypogaea HOM05D003398 ORTHO05D003867 1.6e-18 97.4 198 30.8
COL.COLO4_29209 Corchorus olitorius HOM05D003398 ORTHO05D003867 1.6e-18 97.4 117 39.3
Phvul.004G059400 Phaseolus vulgaris HOM05D003398 ORTHO05D003867 2.1e-18 97.1 164 32.9
Gohir.A07G224700 Gossypium hirsutum HOM05D003398 ORTHO05D003867 3.5e-18 96.3 118 40.7
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 3.5e-18 96.3 151 35.1
BcaC05g30275 Brassica carinata HOM05D003398 ORTHO05D003867 6.0e-18 95.5 163 33.7
Glyma.05G114300 Glycine max HOM05D003398 ORTHO05D003867 6.0e-18 95.5 164 31.1
Haze_14782 Corylus avellana HOM05D003398 ORTHO05D003867 7.9e-18 95.1 178 32.0
unitig_21.g20275 Utricularia gibba HOM05D003198 ORTHO05D003867 1.0e-17 94.7 153 35.3
SHI03844 Sapria himalayana HOM05D003398 ORTHO05D003867 2.3e-17 93.6 106 40.6
Duzib147G0181 Durio zibethinus HOM05D003398 ORTHO05D003867 3.0e-17 93.2 162 32.1
Lalb_Chr02g0158081 Lupinus albus HOM05D003398 ORTHO05D003867 3.0e-17 93.2 198 29.8
DCAR_021745 Daucus carota HOM05D003398 ORTHO05D003867 1.5e-16 90.9 189 30.2
CSS0026494 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 9.6e-16 88.2 155 35.5
Medtr8g021060 Medicago truncatula HOM05D003398 ORTHO05D003867 2.8e-15 86.7 162 30.9
Nitab4.5_0000227g0210 Nicotiana tabacum HOM05D003398 ORTHO05D003867 1.4e-14 84.3 117 35.0
SalBow5G4242 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.8e-14 84.0 168 29.2
PSO067G0049 Papaver somniferum HOM05D003398 ORTHO05D003867 2.0e-13 80.5 137 32.1
SalBow2G0798 Salvia bowleyana HOM05D003398 ORTHO05D003867 4.5e-13 79.3 82 43.9
Ca_19415_v3 Cicer arietinum L. HOM05D003398 ORTHO05D003867 3.8e-12 76.3 168 29.2
ATR0824G258 Amborella trichopoda HOM05D003398 ORTHO05D003867 8.4e-12 75.1 120 35.0
HPP92_023200 Vanilla planifolia HOM05D003398 ORTHO05D003867 8.4e-12 75.1 105 38.1
arahy.Tifrunner.gnm1.ann1.47K06E Arachis hypogaea HOM05D003398 ORTHO05D003867 1.4e-11 74.3 120 35.8
Lj1g0026325 Lotus japonicus HOM05D003398 ORTHO05D003867 3.2e-11 73.2 122 36.1
SalBow5G1640 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.1e-10 70.5 74 47.3
HPP92_009920 Vanilla planifolia HOM05D003398 ORTHO05D003867 2.7e-10 70.1 84 41.7
Phvul.002G317300 Phaseolus vulgaris HOM05D003398 ORTHO05D003867 3.5e-10 69.7 122 36.9
Sc07g0004330 Simmondsia chinensis HOM05D003398 ORTHO05D003867 4.6e-10 69.3 92 37.0
VMungo1383G1108 Vigna mungo HOM05D003398 ORTHO05D003867 7.9e-10 68.6 122 34.4
CBR_g54101 Chara braunii HOM05D003398 ORTHO05D003867 1.1e-08 64.7 73 42.5
Phvul.003G074200 Phaseolus vulgaris HOM05D003398 ORTHO05D003867 7.4e-08 62.0 114 30.7
SalBow8G1447 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.3e-07 61.2 76 40.8
RcHm_v2.0_Chr7g0217921 Rosa chinensis HOM05D003398 ORTHO05D003867 6.2e-07 58.9 73 38.4
RcHm_v2.0_Chr6g0276241 Rosa chinensis HOM05D003398 ORTHO05D003867 3.1e-06 56.6 73 37.0


User provided reference genes

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