Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 1.7e-211 739.2 396 100.0
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 3.8e-14 83.6 118 39.0
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.1e-13 82.0 155 31.0
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.1e-13 82.0 155 31.0
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.4e-13 81.6 150 38.7
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 5.5e-13 79.7 155 30.3
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 9.4e-13 79.0 149 30.2
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.1e-12 77.8 151 30.5
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 2.7e-12 77.4 116 37.1
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 2.7e-12 77.4 109 36.7
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 3.6e-12 77.0 129 32.6
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 4.7e-12 76.6 125 34.4
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 6.1e-12 76.3 116 32.8
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 7.9e-12 75.9 108 35.2
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 7.9e-12 75.9 108 38.0
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 1.0e-11 75.5 109 35.8
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.0e-11 75.5 108 36.1
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 1.0e-11 75.5 165 30.3
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 1.4e-11 75.1 108 38.0
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.4e-11 75.1 151 29.1
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 2.3e-11 74.3 108 37.0
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 2.3e-11 74.3 108 38.0
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.3e-11 74.3 124 36.3
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 2.3e-11 74.3 121 36.4
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 3.0e-11 73.9 151 29.1
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 3.0e-11 73.9 133 32.3
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 3.0e-11 73.9 108 37.0
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 3.0e-11 73.9 108 37.0
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 3.0e-11 73.9 108 37.0
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 3.9e-11 73.6 108 34.3
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 3.9e-11 73.6 124 34.7
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 3.9e-11 73.6 108 37.0
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 5.1e-11 73.2 145 31.7
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 5.1e-11 73.2 108 36.1
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 5.1e-11 73.2 108 36.1
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 5.1e-11 73.2 108 36.1
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 5.1e-11 73.2 108 36.1
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 5.1e-11 73.2 108 36.1
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 5.1e-11 73.2 108 37.0
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 5.1e-11 73.2 111 36.0
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 5.1e-11 73.2 124 34.7
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.1e-11 73.2 108 36.1
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 5.1e-11 73.2 108 38.0
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 5.1e-11 73.2 151 29.1
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 5.1e-11 73.2 151 29.1
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 5.1e-11 73.2 125 34.4
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 6.7e-11 72.8 108 36.1
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 6.7e-11 72.8 148 29.7
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 8.8e-11 72.4 108 37.0
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 8.8e-11 72.4 108 36.1
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 8.8e-11 72.4 108 35.2
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 8.8e-11 72.4 108 36.1
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 8.8e-11 72.4 151 29.1
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 8.8e-11 72.4 108 36.1
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 8.8e-11 72.4 109 35.8
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 1.1e-10 72.0 108 36.1
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.1e-10 72.0 108 36.1
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.1e-10 72.0 108 35.2
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.1e-10 72.0 108 35.2
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.1e-10 72.0 146 31.5
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 1.1e-10 72.0 112 33.9
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 34.3
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 36.1
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 35.2
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 34.3
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 35.2
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 34.3
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 1.5e-10 71.6 112 34.8
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 1.5e-10 71.6 124 33.9
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 35.2
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 36.1
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 36.1
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.5e-10 71.6 118 33.1
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 34.3
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 1.5e-10 71.6 108 38.0
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.0e-10 71.2 108 35.2
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.0e-10 71.2 108 35.2
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 2.0e-10 71.2 108 35.2
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 2.0e-10 71.2 148 31.8
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 2.0e-10 71.2 156 28.8
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 2.0e-10 71.2 148 29.7
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 2.0e-10 71.2 110 35.5
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.0e-10 71.2 108 36.1
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 2.6e-10 70.9 108 35.2
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 2.6e-10 70.9 108 36.1
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.6e-10 70.9 108 35.2
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 2.6e-10 70.9 108 35.2
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 2.6e-10 70.9 108 35.2
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.6e-10 70.9 108 34.3
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 2.6e-10 70.9 108 35.2
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 3.3e-10 70.5 108 34.3
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 3.3e-10 70.5 108 35.2
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 3.3e-10 70.5 108 33.3
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 3.3e-10 70.5 112 35.7
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 3.3e-10 70.5 107 35.5
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 3.3e-10 70.5 108 35.2
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 3.3e-10 70.5 108 35.2
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.3e-10 70.5 108 35.2
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 3.3e-10 70.5 108 35.2
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 3.3e-10 70.5 124 33.9
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 3.3e-10 70.5 108 36.1
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.4e-10 70.1 108 35.2
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.4e-10 70.1 108 35.2
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 5.7e-10 69.7 108 35.2
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.7e-10 69.7 108 35.2
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.7e-10 69.7 108 35.2
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 5.7e-10 69.7 108 35.2
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 5.7e-10 69.7 108 35.2
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 5.7e-10 69.7 108 35.2
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 5.7e-10 69.7 108 35.2
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 5.7e-10 69.7 108 34.3
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 5.7e-10 69.7 108 34.3
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 7.4e-10 69.3 149 27.5
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 7.4e-10 69.3 108 34.3
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 7.4e-10 69.3 125 32.0
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 7.4e-10 69.3 149 27.5
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 7.4e-10 69.3 108 35.2
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 7.4e-10 69.3 108 33.3
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 9.7e-10 68.9 152 28.9
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 9.7e-10 68.9 108 35.2
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 9.7e-10 68.9 153 29.4
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 9.7e-10 68.9 108 35.2
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 9.7e-10 68.9 146 29.5
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 9.7e-10 68.9 124 33.1
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 9.7e-10 68.9 108 34.3
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 1.3e-09 68.6 108 35.2
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 1.3e-09 68.6 108 35.2
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.3e-09 68.6 108 36.1
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.7e-09 68.2 114 35.1
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 1.7e-09 68.2 108 35.2
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 2.2e-09 67.8 108 33.3
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 2.8e-09 67.4 155 32.3
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 3.7e-09 67.0 108 34.3
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 3.7e-09 67.0 108 33.3
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 4.8e-09 66.6 143 28.7
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 4.8e-09 66.6 145 29.7
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 4.8e-09 66.6 145 29.7
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 4.8e-09 66.6 108 33.3
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 4.8e-09 66.6 108 34.3
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 6.3e-09 66.2 112 33.0
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 8.2e-09 65.9 144 29.2
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 1.1e-08 65.5 144 28.5
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.8e-08 64.7 144 29.2
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 2.4e-08 64.3 154 27.9
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 3.1e-08 63.9 166 28.3
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 9.1e-08 62.4 149 27.5
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 1.5e-07 61.6 87 40.2
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 1.0e-06 58.9 129 28.7


User provided reference genes

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