Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 8.9e-139 496.9 244 100.0
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 3.9e-09 66.2 101 39.6
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.9e-08 63.9 83 43.4
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 2.5e-08 63.5 83 43.4
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 3.3e-08 63.2 79 45.6
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 4.3e-08 62.8 83 43.4
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 4.3e-08 62.8 88 43.2
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 4.3e-08 62.8 83 42.2
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 4.3e-08 62.8 89 43.8
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 4.3e-08 62.8 90 40.0
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 5.6e-08 62.4 79 44.3
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 5.6e-08 62.4 83 43.4
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 5.6e-08 62.4 80 45.0
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 7.3e-08 62.0 90 41.1
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 7.3e-08 62.0 80 45.0
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 9.5e-08 61.6 92 41.3
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 9.5e-08 61.6 89 43.8
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 9.5e-08 61.6 89 43.8
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 9.5e-08 61.6 82 42.7
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 1.2e-07 61.2 90 42.2
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.2e-07 61.2 80 43.8
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.2e-07 61.2 80 43.8
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 1.6e-07 60.8 72 45.8
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 1.6e-07 60.8 72 45.8
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.6e-07 60.8 80 42.5
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 1.6e-07 60.8 80 42.5
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 1.6e-07 60.8 72 44.4
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.6e-07 60.8 81 42.0
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 2.1e-07 60.5 72 45.8
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 2.1e-07 60.5 72 45.8
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.1e-07 60.5 72 44.4
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.1e-07 60.5 72 44.4
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.1e-07 60.5 72 44.4
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 2.1e-07 60.5 91 40.7
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.1e-07 60.5 89 42.7
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 2.1e-07 60.5 80 43.8
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.1e-07 60.5 79 44.3
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.1e-07 60.5 79 44.3
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 2.1e-07 60.5 79 44.3
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 2.1e-07 60.5 72 44.4
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.1e-07 60.5 72 43.1
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 2.8e-07 60.1 84 42.9
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 2.8e-07 60.1 72 45.8
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 2.8e-07 60.1 72 45.8
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 2.8e-07 60.1 72 45.8
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 2.8e-07 60.1 72 45.8
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 2.8e-07 60.1 72 45.8
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 2.8e-07 60.1 72 45.8
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 2.8e-07 60.1 72 45.8
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 2.8e-07 60.1 72 45.8
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.8e-07 60.1 72 45.8
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 2.8e-07 60.1 72 45.8
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.6e-07 59.7 89 42.7
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 3.6e-07 59.7 78 43.6
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 3.6e-07 59.7 80 42.5
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 4.7e-07 59.3 72 43.1
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 4.7e-07 59.3 72 43.1
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 4.7e-07 59.3 72 43.1
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 4.7e-07 59.3 79 43.0
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 6.2e-07 58.9 72 43.1
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 6.2e-07 58.9 91 40.7
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 6.2e-07 58.9 83 41.0
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 6.2e-07 58.9 87 39.1
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 6.2e-07 58.9 80 42.5
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 6.2e-07 58.9 80 42.5
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 6.2e-07 58.9 80 42.5
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 6.2e-07 58.9 72 43.1
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 6.2e-07 58.9 72 44.4
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 6.2e-07 58.9 72 43.1
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 6.2e-07 58.9 80 42.5
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 6.2e-07 58.9 80 42.5
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 6.2e-07 58.9 80 42.5
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 8.1e-07 58.5 104 37.5
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.1e-06 58.2 72 45.8
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 1.1e-06 58.2 92 35.9
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.1e-06 58.2 82 40.2
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.1e-06 58.2 72 43.1
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.1e-06 58.2 80 42.5
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.1e-06 58.2 80 42.5
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.1e-06 58.2 72 43.1
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.1e-06 58.2 74 41.9
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 1.1e-06 58.2 74 41.9
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.4e-06 57.8 72 43.1
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.4e-06 57.8 72 43.1
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 1.4e-06 57.8 72 43.1
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.4e-06 57.8 88 42.0
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 1.4e-06 57.8 87 39.1
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.4e-06 57.8 72 43.1
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.8e-06 57.4 80 41.2
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.8e-06 57.4 72 43.1
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 1.8e-06 57.4 83 39.8
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.8e-06 57.4 72 43.1
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 1.8e-06 57.4 80 41.2
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.4e-06 57.0 83 41.0
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 2.4e-06 57.0 100 36.0
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 2.4e-06 57.0 77 40.3
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 2.4e-06 57.0 72 43.1
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 2.4e-06 57.0 97 34.0
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 3.1e-06 56.6 72 43.1
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 3.1e-06 56.6 72 41.7
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 3.1e-06 56.6 99 33.3
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 3.1e-06 56.6 77 41.6
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 4.0e-06 56.2 79 41.8
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 4.0e-06 56.2 72 43.1
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 4.0e-06 56.2 90 42.2
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 4.0e-06 56.2 99 36.4
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 4.0e-06 56.2 72 41.7
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 5.2e-06 55.8 102 35.3
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 5.2e-06 55.8 72 41.7
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 5.2e-06 55.8 72 41.7
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 5.2e-06 55.8 72 41.7
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 6.8e-06 55.5 71 42.3
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 6.8e-06 55.5 97 39.2
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 8.9e-06 55.1 88 37.5


User provided reference genes

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