Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 2783.4 1446 100.0
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 2.1e-166 591.3 971 38.4
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 1.7e-165 588.2 990 37.6
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 1.7e-165 588.2 990 37.5
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 2.3e-165 587.8 991 37.6
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 8.6e-165 585.9 999 38.3
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 8.6e-165 585.9 988 37.4
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 1.1e-164 585.5 990 37.6
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 5.6e-164 583.2 977 37.6
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 9.5e-164 582.4 984 37.4
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 3.1e-162 577.4 977 37.4
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 4.0e-162 577.0 991 37.8
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 6.8e-162 576.2 988 38.1
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 6.8e-162 576.2 984 38.4
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 1.2e-161 575.5 981 37.1
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 1.2e-161 575.5 985 37.5
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 1.5e-161 575.1 987 38.4
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 1.5e-161 575.1 982 38.2
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 2.6e-161 574.3 977 37.3
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 3.4e-161 573.9 986 37.9
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 7.6e-161 572.8 991 37.9
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 1.3e-160 572.0 982 37.4
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 1.7e-160 571.6 987 36.9
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 6.4e-160 569.7 985 36.9
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 6.4e-160 569.7 988 37.9
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 2.4e-159 567.8 986 37.6
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 7.1e-159 566.2 985 37.4
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 9.2e-159 565.8 986 36.1
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 9.2e-159 565.8 978 36.9
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 1.2e-158 565.5 981 36.3
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 2.7e-158 564.3 983 37.1
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 3.5e-158 563.9 986 36.1
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 4.6e-158 563.5 985 37.2
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 4.6e-158 563.5 985 37.5
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 6.0e-158 563.1 988 36.6
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 6.0e-158 563.1 988 37.8
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 1.3e-157 562.0 986 36.5
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 1.7e-157 561.6 986 36.0
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 1.7e-157 561.6 981 36.6
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 1.7e-157 561.6 986 38.0
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 1.7e-157 561.6 1000 37.0
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 2.3e-157 561.2 986 36.1
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 2.3e-157 561.2 988 37.3
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 3.0e-157 560.8 985 37.7
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 3.9e-157 560.5 973 37.3
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 5.1e-157 560.1 1001 37.6
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 6.6e-157 559.7 1018 35.8
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 8.6e-157 559.3 983 37.8
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 8.6e-157 559.3 985 36.6
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 8.6e-157 559.3 988 37.1
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 1.5e-156 558.5 983 36.9
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 1.5e-156 558.5 984 36.9
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 1.9e-156 558.1 987 36.8
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.9e-156 558.1 995 36.9
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 4.3e-156 557.0 977 36.9
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 5.6e-156 556.6 975 36.5
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 7.3e-156 556.2 986 36.8
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 1.2e-155 555.4 984 36.8
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 1.2e-155 555.4 987 37.1
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 1.6e-155 555.1 987 36.9
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 2.8e-155 554.3 978 37.2
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 4.7e-155 553.5 957 36.4
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 2.4e-154 551.2 987 36.2
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 1.2e-153 548.9 980 36.1
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 3.4e-153 547.4 980 37.2
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 5.8e-153 546.6 980 36.5
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 5.8e-153 546.6 980 36.5
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 7.6e-153 546.2 983 36.3
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 1.4e-151 542.0 940 37.7
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 1.3e-149 535.4 934 36.7
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 6.6e-149 533.1 1027 34.7
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 1.8e-146 525.0 1016 35.2
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 7.6e-145 519.6 986 35.2
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 9.9e-145 519.2 980 35.2
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 1.1e-143 515.8 908 38.0
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 2.4e-143 514.6 938 36.4
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 7.1e-143 513.1 949 36.4
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 1.6e-142 511.9 994 35.7
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 2.5e-140 504.6 897 37.8
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 8.1e-139 499.6 987 34.9
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 7.6e-137 493.0 1003 34.4
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 2.7e-134 484.6 978 34.9
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 7.9e-134 483.0 978 34.8
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 3.7e-131 474.2 870 36.4
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 1.1e-130 472.6 996 33.6
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 1.8e-130 471.9 738 39.0
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 4.3e-124 450.7 670 40.6
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 5.3e-122 443.7 979 32.6
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 2.7e-118 431.4 555 44.0
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 2.3e-117 428.3 502 46.4
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 1.0e-112 412.9 455 49.0
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 4.6e-110 404.1 1005 31.9
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 9.7e-108 396.4 811 32.8
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 4.5e-97 360.9 374 51.9
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 7.7e-97 360.1 371 52.0
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 9.7e-92 343.2 740 33.9
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 2.0e-81 308.9 709 31.9
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 2.7e-81 308.5 317 50.8
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 6.1e-78 297.4 719 30.7
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 4.1e-74 284.6 710 30.6
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 2.7e-73 282.0 685 30.7
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 2.9e-72 278.5 800 29.6
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 2.9e-72 278.5 311 46.9
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 3.3e-71 275.0 275 51.6
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 1.7e-56 226.1 377 35.5
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 4.3e-55 221.5 631 27.9
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 4.7e-46 191.4 599 27.2
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 3.0e-32 145.6 205 45.9
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 1.5e-28 133.3 110 62.7
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 5.6e-23 114.8 425 26.1
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 1.4e-21 110.2 150 46.0
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 7.6e-20 104.4 130 39.2
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 2.4e-18 99.4 127 40.2
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 3.1e-13 82.4 84 53.6
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 3.2e-10 72.4 214 30.4
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 3.2e-10 72.4 214 30.4
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 5.5e-10 71.6 354 23.4
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 7.1e-10 71.2 131 35.1
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 9.3e-10 70.9 356 24.4
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.7e-09 69.3 214 30.4
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 2.7e-09 69.3 156 34.6
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 4.6e-09 68.6 356 24.7
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 6.0e-09 68.2 214 29.9
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 2.3e-08 66.2 176 31.2
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 6.7e-08 64.7 189 30.7
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 1.1e-07 63.9 214 29.4
Zm00001eb257050 Zea mays HOM05D006593 ORTHO05D008512 2.5e-07 62.8 213 26.3
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 5.7e-07 61.6 191 26.2
Aqoxy5G01304_Aqoxy5G01305 Aquilegia oxysepala HOM05D006593 ORTHO05D008512 7.4e-07 61.2 175 28.6
Aqoxy7G01739 Aquilegia oxysepala HOM05D004630 ORTHO05D005727 7.4e-07 61.2 147 27.2
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 1.6e-06 60.1 189 27.5
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 2.2e-06 59.7 178 28.1
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 2.2e-06 59.7 179 27.9
Glyma.01G023700 Glycine max HOM05D006593 ORTHO05D008512 4.8e-06 58.5 179 28.5
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 4.8e-06 58.5 189 28.0
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 4.8e-06 58.5 147 27.2
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 6.3e-06 58.2 189 29.1
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 6.3e-06 58.2 189 28.0
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 6.3e-06 58.2 189 28.0
CiPaw.07G048200 Carya illinoinensis HOM05D006593 ORTHO05D008512 8.2e-06 57.8 181 28.7
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 8.2e-06 57.8 56 55.4
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 8.2e-06 57.8 179 27.9


User provided reference genes

Program Settings