Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 0.0e+00 3000.3 1538 100.0
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 2.0e-79 302.4 465 41.7
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 2.6e-79 302.0 468 40.4
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 3.5e-79 301.6 471 42.0
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 3.8e-78 298.1 458 41.5
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 6.5e-78 297.4 460 42.0
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 8.5e-78 297.0 467 42.6
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 8.5e-78 297.0 458 41.0
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 8.5e-78 297.0 470 40.6
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 1.5e-77 296.2 461 39.9
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.5e-77 296.2 460 41.3
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.9e-77 295.8 459 41.6
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 3.2e-77 295.0 454 42.3
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 4.2e-77 294.7 466 40.1
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 7.2e-77 293.9 458 40.8
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 9.4e-77 293.5 470 39.4
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.2e-76 293.1 459 40.7
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.2e-76 293.1 458 42.4
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.6e-76 292.7 466 39.9
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 1.6e-76 292.7 466 41.2
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 2.1e-76 292.4 450 40.4
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 2.7e-76 292.0 455 40.4
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 2.7e-76 292.0 457 39.8
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 2.7e-76 292.0 458 41.9
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 2.7e-76 292.0 461 41.4
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 3.6e-76 291.6 457 40.3
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 3.6e-76 291.6 466 39.7
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 3.6e-76 291.6 466 39.7
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 3.6e-76 291.6 466 39.7
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 3.6e-76 291.6 458 41.0
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 4.7e-76 291.2 466 39.5
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 6.1e-76 290.8 485 38.8
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 6.1e-76 290.8 469 43.1
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 6.1e-76 290.8 456 41.4
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 8.0e-76 290.4 472 39.8
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.0e-75 290.0 469 40.1
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 1.8e-75 289.3 457 41.6
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 2.3e-75 288.9 456 41.7
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 2.3e-75 288.9 457 41.6
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 3.0e-75 288.5 460 40.2
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 4.0e-75 288.1 456 41.4
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 4.0e-75 288.1 466 39.7
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 4.0e-75 288.1 458 40.8
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 5.2e-75 287.7 457 40.5
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 5.2e-75 287.7 458 40.2
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 5.2e-75 287.7 471 40.1
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 6.7e-75 287.3 458 40.8
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.2e-74 286.6 456 40.1
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.2e-74 286.6 467 40.3
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.5e-74 286.2 460 40.0
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 1.5e-74 286.2 460 40.9
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.0e-74 285.8 469 39.9
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 2.0e-74 285.8 466 38.6
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 2.0e-74 285.8 449 41.0
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 2.6e-74 285.4 454 40.1
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 2.6e-74 285.4 471 40.3
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.6e-74 285.4 469 41.4
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.3e-74 285.0 474 38.4
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 4.4e-74 284.6 456 39.9
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 4.4e-74 284.6 461 39.9
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 4.4e-74 284.6 460 40.4
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 4.4e-74 284.6 478 39.3
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 5.7e-74 284.3 455 40.0
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 5.7e-74 284.3 460 40.0
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 7.5e-74 283.9 456 41.2
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 9.7e-74 283.5 482 38.2
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 9.7e-74 283.5 477 39.0
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 9.7e-74 283.5 464 41.2
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 9.7e-74 283.5 457 40.5
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 9.7e-74 283.5 478 39.1
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 1.3e-73 283.1 458 40.4
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 1.3e-73 283.1 463 40.4
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 1.3e-73 283.1 456 40.4
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 1.3e-73 283.1 464 40.1
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.3e-73 283.1 456 40.4
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 1.7e-73 282.7 458 41.0
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.2e-73 282.3 456 40.8
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.8e-73 282.0 466 38.8
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 3.7e-73 281.6 458 40.4
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 4.8e-73 281.2 455 40.2
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 4.8e-73 281.2 470 39.6
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 4.8e-73 281.2 457 39.8
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 6.3e-73 280.8 458 41.0
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 6.3e-73 280.8 463 39.5
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 8.2e-73 280.4 434 41.0
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 8.2e-73 280.4 468 38.7
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 8.2e-73 280.4 456 40.8
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 8.2e-73 280.4 466 39.9
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 1.4e-72 279.6 457 40.0
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 2.4e-72 278.9 460 39.6
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 2.4e-72 278.9 458 39.3
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.4e-72 278.9 459 40.5
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 3.1e-72 278.5 443 40.2
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 3.1e-72 278.5 455 39.6
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.0e-71 275.8 458 39.5
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 2.7e-71 275.4 471 39.1
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 7.7e-71 273.9 425 41.9
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.3e-70 273.1 461 38.2
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.3e-70 273.1 427 41.2
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.3e-70 273.1 435 41.1
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.3e-70 273.1 460 38.3
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.2e-70 272.3 454 39.4
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 6.5e-70 270.8 467 38.1
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 7.2e-69 267.3 427 40.5
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 2.1e-68 265.8 459 39.9
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.1e-68 265.8 464 37.5
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.0e-66 259.2 459 40.1
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 7.5e-66 257.3 458 38.4
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.8e-66 256.9 392 42.9
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 2.2e-65 255.8 519 36.6
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 8.3e-65 253.8 466 36.3
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 3.1e-64 251.9 452 37.8
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 7.0e-64 250.8 457 38.7
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.5e-62 244.2 378 42.1
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 8.6e-62 243.8 601 33.8
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.0e-59 236.9 449 37.2
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 4.0e-59 235.0 387 39.0
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 4.0e-59 235.0 469 36.5
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 3.4e-58 231.9 448 37.1
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.4e-58 231.9 273 48.4
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.9e-57 228.0 278 45.7
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 6.3e-57 227.6 271 46.1
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.3e-57 227.6 273 47.3
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.3e-57 227.6 273 47.6
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 2.4e-56 225.7 447 36.7
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 2.0e-55 222.6 271 47.2
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 2.3e-43 182.6 374 37.2
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 4.9e-41 174.9 430 32.3
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 6.6e-30 137.9 267 36.0
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 2.1e-23 116.3 232 34.9
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.8e-15 87.8 114 44.7
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.3e-12 80.5 81 49.4
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 2.1e-12 79.7 95 45.3
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.2e-09 69.7 101 41.6
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 7.1e-08 64.7 189 28.6
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 2.1e-07 63.2 169 30.8
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 2.7e-07 62.8 149 32.9
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 6.0e-07 61.6 149 32.9
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.3e-06 60.5 149 30.9
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.3e-06 60.5 149 30.9
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.3e-06 60.5 165 29.7
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 1.8e-06 60.1 165 29.1
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.3e-06 59.7 162 30.2
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 2.3e-06 59.7 165 32.1
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 3.0e-06 59.3 149 28.9
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 3.0e-06 59.3 149 30.2
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 3.9e-06 58.9 162 31.5
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 3.9e-06 58.9 149 30.9
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 3.9e-06 58.9 231 26.0
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 3.9e-06 58.9 231 26.0
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 3.9e-06 58.9 153 33.3
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 3.9e-06 58.9 151 31.8
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 5.1e-06 58.5 149 26.8
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 5.1e-06 58.5 149 26.8
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 6.7e-06 58.2 149 30.9
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 8.7e-06 57.8 162 27.8
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 8.7e-06 57.8 186 28.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 8.7e-06 57.8 164 30.5
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 8.7e-06 57.8 154 31.8
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 8.7e-06 57.8 154 31.8
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 8.7e-06 57.8 165 29.7
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 8.7e-06 57.8 151 33.1
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 8.7e-06 57.8 149 30.2
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 8.7e-06 57.8 149 28.2
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 8.7e-06 57.8 149 30.2


User provided reference genes

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