Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.9e-252 874.0 448 100.0
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 1.1e-30 138.7 332 30.7
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.9e-30 137.9 332 31.3
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 2.5e-30 137.5 332 30.7
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 4.3e-30 136.7 332 30.4
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 1.2e-29 135.2 398 28.4
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 1.6e-29 134.8 285 32.3
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 2.1e-29 134.4 333 30.6
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 2.1e-29 134.4 332 29.5
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 2.8e-29 134.0 193 38.9
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 3.6e-29 133.7 193 38.9
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 4.7e-29 133.3 332 31.0
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 6.2e-29 132.9 332 29.8
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.1e-28 132.1 240 36.7
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.4e-28 131.7 332 29.5
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.4e-28 131.7 335 31.0
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 1.8e-28 131.3 332 30.7
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 1.8e-28 131.3 332 30.4
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 2.4e-28 131.0 334 30.8
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 2.4e-28 131.0 374 29.7
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 2.4e-28 131.0 332 31.0
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 2.4e-28 131.0 334 29.3
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 5.2e-28 129.8 332 30.4
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 5.2e-28 129.8 398 28.6
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 5.2e-28 129.8 224 36.6
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 6.8e-28 129.4 376 30.1
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 6.8e-28 129.4 376 30.1
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 8.9e-28 129.0 252 35.3
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 1.5e-27 128.3 193 37.3
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.5e-27 128.3 447 28.4
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 2.0e-27 127.9 299 31.4
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 2.0e-27 127.9 332 30.1
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 2.6e-27 127.5 378 29.1
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 3.4e-27 127.1 332 29.5
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 3.4e-27 127.1 333 30.9
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 3.4e-27 127.1 261 36.0
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 4.4e-27 126.7 224 36.6
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 5.8e-27 126.3 193 37.8
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 5.8e-27 126.3 193 38.9
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 7.6e-27 125.9 381 27.3
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 7.6e-27 125.9 251 34.3
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 7.6e-27 125.9 391 28.9
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 9.9e-27 125.6 395 28.1
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 1.7e-26 124.8 370 29.2
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.7e-26 124.8 192 37.0
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.7e-26 124.8 396 27.5
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 2.2e-26 124.4 353 28.3
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.2e-26 124.4 395 28.6
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 2.2e-26 124.4 193 36.8
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 2.9e-26 124.0 192 38.0
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 3.8e-26 123.6 382 29.8
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 3.8e-26 123.6 283 30.7
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 3.8e-26 123.6 283 32.5
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 3.8e-26 123.6 193 36.3
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 3.8e-26 123.6 296 31.1
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 3.8e-26 123.6 389 29.3
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 3.8e-26 123.6 351 30.2
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 4.9e-26 123.2 193 38.3
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 4.9e-26 123.2 321 30.5
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 4.9e-26 123.2 372 28.0
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 4.9e-26 123.2 283 30.4
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 6.4e-26 122.9 313 29.1
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 6.4e-26 122.9 283 31.1
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 8.4e-26 122.5 262 31.7
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 8.4e-26 122.5 235 33.2
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.1e-25 122.1 334 29.6
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 1.1e-25 122.1 393 27.7
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.1e-25 122.1 236 33.9
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.1e-25 122.1 394 27.7
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 1.1e-25 122.1 360 28.9
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.4e-25 121.7 193 37.3
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.4e-25 121.7 394 27.7
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.4e-25 121.7 332 29.8
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 1.9e-25 121.3 332 30.4
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.9e-25 121.3 329 29.8
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 1.9e-25 121.3 193 37.3
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.4e-25 120.9 404 27.2
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 2.4e-25 120.9 370 28.4
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 2.4e-25 120.9 331 28.7
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 3.2e-25 120.6 394 27.2
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 3.2e-25 120.6 375 29.1
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.2e-25 120.2 391 27.9
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 4.2e-25 120.2 308 29.5
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 5.4e-25 119.8 393 27.0
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 5.4e-25 119.8 193 35.8
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 5.4e-25 119.8 391 27.9
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 7.1e-25 119.4 285 30.9
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 1.6e-24 118.2 193 36.3
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.7e-24 117.5 283 31.1
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 6.0e-24 116.3 382 28.3
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 1.3e-23 115.2 231 32.0
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 1.3e-23 115.2 374 28.3
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.7e-23 114.8 252 33.3
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.7e-23 114.8 204 34.3
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 2.3e-23 114.4 405 27.2
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 5.1e-23 113.2 358 28.8
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.1e-23 113.2 270 30.7
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 6.6e-23 112.8 431 26.5
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 6.6e-23 112.8 393 28.0
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 9.6e-22 109.0 309 29.4
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.5e-19 101.7 407 27.8
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 2.0e-19 101.3 327 28.1
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 9.9e-19 99.0 296 29.4
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.1e-17 95.5 313 26.2
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.4e-17 95.1 152 37.5
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 3.2e-17 94.0 229 29.3
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 7.1e-17 92.8 206 31.6
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 1.2e-16 92.0 155 34.8
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.3e-15 88.6 340 26.2
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 3.0e-15 87.4 212 31.1
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 8.7e-15 85.9 181 34.3
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 3.3e-14 84.0 175 34.3
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 2.8e-13 80.9 193 29.5
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.4e-12 77.8 240 29.6
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 1.2e-11 75.5 259 26.6
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 2.2e-10 71.2 147 29.9
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 1.4e-09 68.6 259 25.9
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 3.2e-09 67.4 146 28.1
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 7.1e-09 66.2 162 28.4
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 9.3e-09 65.9 139 30.9
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 2.1e-08 64.7 144 28.5
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 2.7e-08 64.3 201 27.4
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 4.6e-08 63.5 162 28.4
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 3.3e-06 57.4 47 57.4
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 4.3e-06 57.0 47 59.6
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 7.4e-06 56.2 136 29.4


User provided reference genes

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