Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.1e-93 344.7 178 100.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 4.3e-26 122.1 131 48.1
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 5.3e-24 115.2 152 44.7
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 5.3e-24 115.2 116 54.3
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 2.2e-22 109.8 129 46.5
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.2e-20 104.0 100 54.0
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.6e-20 103.6 121 49.6
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.6e-20 102.4 106 48.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 7.9e-20 101.3 124 44.4
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 7.9e-20 101.3 100 51.0
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.3e-19 99.8 115 44.3
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 2.3e-19 99.8 101 50.5
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 2.3e-19 99.8 119 45.4
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 2.3e-19 99.8 119 45.4
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 3.0e-19 99.4 102 51.0
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.0e-19 99.4 119 43.7
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 3.0e-19 99.4 155 41.3
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 3.9e-19 99.0 100 49.0
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 5.1e-19 98.6 101 49.5
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 6.7e-19 98.2 130 42.3
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 6.7e-19 98.2 156 41.0
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.7e-19 98.2 100 49.0
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 6.7e-19 98.2 100 49.0
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 6.7e-19 98.2 112 46.4
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 8.8e-19 97.8 106 46.2
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 8.8e-19 97.8 100 49.0
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 8.8e-19 97.8 115 44.3
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.6e-18 96.3 113 46.0
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 2.6e-18 96.3 103 46.6
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 2.6e-18 96.3 103 46.6
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 2.6e-18 96.3 101 50.5
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.6e-18 96.3 167 42.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 3.3e-18 95.9 101 48.5
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 3.3e-18 95.9 125 43.2
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 3.3e-18 95.9 113 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 4.4e-18 95.5 126 40.5
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 4.4e-18 95.5 130 41.5
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 4.4e-18 95.5 113 44.2
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 4.4e-18 95.5 113 45.1
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 4.4e-18 95.5 113 45.1
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 5.7e-18 95.1 101 45.5
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 5.7e-18 95.1 115 41.7
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 7.4e-18 94.7 113 46.0
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 7.4e-18 94.7 101 45.5
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 7.4e-18 94.7 115 41.7
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 7.4e-18 94.7 123 43.1
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 7.4e-18 94.7 145 41.4
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 9.7e-18 94.4 111 45.9
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 9.7e-18 94.4 123 43.1
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 9.7e-18 94.4 129 39.5
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.3e-17 94.0 101 46.5
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.3e-17 94.0 83 54.2
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.3e-17 94.0 113 44.2
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.7e-17 93.6 101 45.5
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.7e-17 93.6 128 41.4
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.7e-17 93.6 155 38.1
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.2e-17 93.2 113 45.1
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.2e-17 93.2 135 41.5
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 2.2e-17 93.2 169 37.9
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.8e-17 92.8 103 45.6
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.8e-17 92.8 125 42.4
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.7e-17 92.4 113 44.2
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 3.7e-17 92.4 127 40.2
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 3.7e-17 92.4 121 40.5
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 3.7e-17 92.4 153 36.6
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 4.8e-17 92.0 126 40.5
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 4.8e-17 92.0 101 44.6
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 4.8e-17 92.0 115 42.6
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 8.2e-17 91.3 113 44.2
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.1e-16 90.9 146 38.4
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.1e-16 90.9 111 41.4
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 1.4e-16 90.5 146 38.4
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.8e-16 90.1 136 39.0
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 1.8e-16 90.1 128 39.8
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.8e-16 90.1 153 35.3
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.8e-16 90.1 184 34.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 4.1e-16 89.0 152 36.8
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 4.1e-16 89.0 101 42.6
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 5.3e-16 88.6 138 39.9
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 6.9e-16 88.2 113 40.7
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 6.9e-16 88.2 122 39.3
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 9.1e-16 87.8 161 36.6
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.5e-15 87.0 112 43.8
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.5e-15 87.0 112 43.8
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.5e-15 87.0 136 36.8
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.5e-15 87.0 136 36.8
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.5e-15 87.0 101 42.6
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.5e-15 87.0 127 40.2
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.5e-15 87.0 113 40.7
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.6e-15 86.3 136 36.8
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 4.5e-15 85.5 135 37.8
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 4.5e-15 85.5 116 37.1
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 5.9e-15 85.1 155 36.1
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 7.7e-15 84.7 160 36.2
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 7.7e-15 84.7 133 38.3
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.0e-14 84.3 133 38.3
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.3e-14 84.0 112 42.9
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.3e-14 84.0 141 38.3
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 1.3e-14 84.0 144 38.2
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.7e-14 83.6 137 40.1
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 2.9e-14 82.8 146 36.3
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.9e-14 82.8 114 39.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 2.9e-14 82.8 166 35.5
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 3.8e-14 82.4 167 37.1
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 3.8e-14 82.4 113 40.7
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 5.0e-14 82.0 125 38.4
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 6.5e-14 81.6 167 34.7
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 8.5e-14 81.3 142 39.4
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.4e-13 80.5 128 39.1
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.9e-13 80.1 120 36.7
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 4.2e-13 79.0 152 35.5
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 9.4e-13 77.8 129 40.3
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 9.4e-13 77.8 187 29.9
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 2.7e-12 76.3 100 43.0
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.0e-11 74.3 124 36.3
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.0e-11 74.3 124 36.3
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 2.3e-11 73.2 129 34.1
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 3.0e-11 72.8 124 35.5
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 8.8e-11 71.2 124 34.7
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 7.4e-10 68.2 101 42.6
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 9.7e-10 67.8 126 34.1
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.2e-09 66.6 119 36.1
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 3.7e-09 65.9 58 50.0
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 4.8e-09 65.5 51 56.9
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.4e-08 63.2 105 40.0
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.2e-07 60.8 54 48.1
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.6e-07 60.5 100 39.0
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 2.0e-07 60.1 100 37.0
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 3.5e-07 59.3 102 35.3
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 3.5e-07 59.3 55 49.1
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 4.5e-07 58.9 112 33.9
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 1.7e-06 57.0 39 56.4
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.7e-06 57.0 39 56.4
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 5.0e-06 55.5 73 38.4
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 6.5e-06 55.1 172 29.1


User provided reference genes

Program Settings