Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 1.4e-237 825.9 422 100.0
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 8.6e-57 225.3 435 36.3
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 1.3e-52 211.5 412 35.2
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 7.1e-51 205.7 384 36.7
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 1.2e-50 204.9 379 37.5
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 3.5e-50 203.4 365 37.5
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 3.5e-50 203.4 365 37.5
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 4.6e-50 203.0 367 37.6
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 4.6e-50 203.0 380 36.3
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 4.6e-50 203.0 383 35.8
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 4.6e-50 203.0 380 36.8
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 6.0e-50 202.6 365 37.5
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 6.0e-50 202.6 365 37.5
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 6.0e-50 202.6 365 35.9
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 7.8e-50 202.2 370 34.6
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 1.0e-49 201.8 382 36.6
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 1.3e-49 201.4 383 36.3
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 1.3e-49 201.4 377 35.5
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 1.3e-49 201.4 365 36.7
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.7e-49 201.1 417 35.3
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.7e-49 201.1 378 37.3
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 2.3e-49 200.7 380 36.3
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 3.9e-49 199.9 412 35.7
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 3.9e-49 199.9 427 34.7
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 5.1e-49 199.5 379 36.7
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 6.6e-49 199.1 379 36.9
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 6.6e-49 199.1 379 36.9
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 6.6e-49 199.1 377 36.9
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 6.6e-49 199.1 390 36.7
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 8.7e-49 198.7 382 37.2
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 8.7e-49 198.7 381 36.0
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 1.1e-48 198.4 381 36.7
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 1.1e-48 198.4 381 37.3
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 1.1e-48 198.4 383 36.8
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 1.1e-48 198.4 365 36.7
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.1e-48 198.4 381 36.2
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 1.5e-48 198.0 399 36.1
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 1.5e-48 198.0 382 36.4
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 1.5e-48 198.0 395 35.2
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 1.5e-48 198.0 365 36.7
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.9e-48 197.6 365 37.3
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.9e-48 197.6 383 36.8
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 1.9e-48 197.6 365 36.4
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 2.5e-48 197.2 397 35.8
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 2.5e-48 197.2 381 36.7
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 2.5e-48 197.2 380 35.5
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 2.5e-48 197.2 365 35.9
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 4.3e-48 196.4 370 36.5
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 4.3e-48 196.4 378 36.0
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 7.3e-48 195.7 365 37.0
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 7.3e-48 195.7 416 33.9
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 9.6e-48 195.3 411 34.3
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 1.2e-47 194.9 414 33.3
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 1.2e-47 194.9 380 35.8
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 1.2e-47 194.9 384 36.2
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 1.2e-47 194.9 381 36.5
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.2e-47 194.9 422 34.4
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 1.6e-47 194.5 417 34.5
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.6e-47 194.5 426 34.5
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 1.6e-47 194.5 381 35.7
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 1.6e-47 194.5 365 35.9
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 2.1e-47 194.1 365 36.2
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 2.1e-47 194.1 377 36.3
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.6e-47 193.4 416 34.1
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 6.2e-47 192.6 365 36.4
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 6.2e-47 192.6 427 33.7
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 6.2e-47 192.6 430 35.6
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 8.1e-47 192.2 414 33.8
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.1e-46 191.8 365 36.4
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 1.4e-46 191.4 377 36.3
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.4e-46 191.4 381 36.5
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 1.4e-46 191.4 394 35.0
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 1.4e-46 191.4 376 37.0
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 1.8e-46 191.0 386 35.2
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 2.4e-46 190.7 419 35.3
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 2.4e-46 190.7 381 36.2
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 2.4e-46 190.7 381 34.9
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 3.1e-46 190.3 365 36.2
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 4.0e-46 189.9 381 36.2
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.0e-46 189.9 381 36.2
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 5.3e-46 189.5 390 36.2
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 5.3e-46 189.5 380 35.0
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 6.9e-46 189.1 379 35.1
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 1.2e-45 188.3 409 35.5
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 1.5e-45 188.0 365 36.2
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.5e-45 188.0 265 43.0
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 2.0e-45 187.6 376 35.4
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 2.9e-44 183.7 381 34.4
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 2.9e-44 183.7 436 33.5
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 3.8e-44 183.3 379 36.1
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 1.4e-43 181.4 339 35.7
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 3.2e-43 180.3 332 38.0
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 3.2e-43 180.3 348 36.2
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 3.5e-42 176.8 407 31.7
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 6.0e-42 176.0 376 34.6
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 1.3e-41 174.9 381 33.6
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 1.3e-41 174.9 369 33.9
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 2.3e-41 174.1 366 34.7
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 3.0e-41 173.7 276 39.9
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 3.3e-40 170.2 300 38.3
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 5.6e-40 169.5 291 39.5
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 6.2e-39 166.0 331 36.3
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 1.1e-38 165.2 372 33.1
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 6.9e-38 162.5 376 33.0
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 1.4e-35 154.8 263 38.4
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 7.1e-35 152.5 288 37.8
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 1.2e-34 151.8 322 33.5
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 6.0e-34 149.4 389 31.6
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 3.3e-32 143.7 195 42.1
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 7.4e-32 142.5 297 36.4
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 1.6e-31 141.4 207 40.6
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 1.1e-27 128.6 429 27.7
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 2.1e-26 124.4 273 34.1
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 1.5e-24 118.2 396 29.5
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.5e-19 99.8 216 34.7
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 5.7e-16 89.7 205 33.7
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 6.3e-15 86.3 210 32.9
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 2.5e-08 64.3 122 40.2
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 2.8e-07 60.8 67 46.3
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.7e-07 60.5 73 43.8
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 4.1e-06 57.0 79 38.0


User provided reference genes

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