Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 0.0e+00 1272.3 637 100.0
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 6.6e-101 372.5 528 40.0
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.1e-100 371.7 527 39.1
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.5e-100 371.3 562 37.7
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.5e-100 371.3 554 38.1
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.9e-100 370.9 522 39.7
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 1.9e-100 370.9 562 37.7
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.5e-100 370.5 553 38.5
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 3.3e-100 370.2 561 37.4
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 4.3e-100 369.8 527 40.0
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 5.6e-100 369.4 522 39.1
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 7.3e-100 369.0 523 38.8
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 9.5e-100 368.6 561 37.4
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 9.5e-100 368.6 523 38.8
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 9.5e-100 368.6 523 38.6
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.6e-99 367.9 525 37.9
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.6e-99 367.9 528 39.8
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 1.6e-99 367.9 514 39.7
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 1.6e-99 367.9 562 37.4
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.6e-99 367.9 522 39.7
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 1.6e-99 367.9 526 40.3
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.6e-99 367.9 528 38.4
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.6e-99 367.9 531 38.8
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.6e-99 367.9 519 38.9
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 2.1e-99 367.5 522 39.1
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 2.1e-99 367.5 539 37.8
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.8e-99 367.1 528 39.2
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 2.8e-99 367.1 548 38.5
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 3.6e-99 366.7 515 40.2
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 3.6e-99 366.7 522 38.7
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 3.6e-99 366.7 514 39.1
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 4.7e-99 366.3 528 39.4
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 4.7e-99 366.3 560 38.0
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 6.2e-99 365.9 519 39.5
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 6.2e-99 365.9 559 37.4
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 6.2e-99 365.9 523 38.6
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 8.1e-99 365.5 528 38.8
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 8.1e-99 365.5 528 40.0
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 1.1e-98 365.2 530 38.3
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-98 364.8 561 37.3
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.4e-98 364.8 518 39.4
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.8e-98 364.4 520 39.0
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.8e-98 364.4 528 39.2
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 2.3e-98 364.0 513 39.2
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 3.1e-98 363.6 545 38.5
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.8e-98 362.5 515 39.2
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 6.8e-98 362.5 532 38.2
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 8.9e-98 362.1 521 38.2
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 8.9e-98 362.1 519 38.2
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.2e-97 361.7 528 38.6
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.2e-97 361.7 534 38.0
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.5e-97 361.3 516 38.4
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 3.4e-97 360.1 534 37.8
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 3.4e-97 360.1 514 40.1
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 4.4e-97 359.8 525 38.5
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.4e-97 359.8 513 38.0
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.4e-97 359.8 513 38.0
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 4.4e-97 359.8 513 38.0
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 9.9e-97 358.6 528 38.4
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.2e-96 357.5 516 37.6
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 3.7e-96 356.7 524 38.4
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 3.7e-96 356.7 544 37.5
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 4.9e-96 356.3 516 38.8
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 4.9e-96 356.3 518 37.8
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 6.4e-96 355.9 523 38.0
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 6.4e-96 355.9 589 37.0
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 8.4e-96 355.5 545 38.3
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.4e-95 354.8 516 38.6
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 1.9e-95 354.4 527 37.8
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 2.4e-95 354.0 524 38.2
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 3.2e-95 353.6 544 37.5
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 4.1e-95 353.2 517 37.5
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 4.1e-95 353.2 526 38.0
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.1e-95 353.2 513 37.4
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 4.1e-95 353.2 514 38.9
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 4.1e-95 353.2 513 38.0
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 5.4e-95 352.8 513 38.4
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 5.4e-95 352.8 554 36.3
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 5.4e-95 352.8 575 35.8
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 5.4e-95 352.8 521 37.6
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 9.2e-95 352.1 516 37.4
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.2e-94 351.7 516 37.4
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.6e-94 351.3 511 38.0
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.1e-94 350.9 554 35.9
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 2.1e-94 350.9 516 36.8
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 2.7e-94 350.5 516 37.4
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 6.0e-94 349.4 516 37.2
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 7.8e-94 349.0 515 38.1
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 7.8e-94 349.0 541 37.7
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 7.8e-94 349.0 566 34.8
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 1.0e-93 348.6 513 36.8
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.3e-93 348.2 543 36.3
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.7e-93 347.8 520 36.7
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 2.3e-93 347.4 560 36.2
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 2.3e-93 347.4 525 36.4
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.9e-93 346.7 528 37.5
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.9e-93 346.7 514 38.3
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 3.9e-93 346.7 528 36.4
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 5.1e-93 346.3 533 35.1
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 6.6e-93 345.9 570 34.7
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.1e-92 345.1 522 37.2
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.9e-92 344.4 525 36.4
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 1.9e-92 344.4 514 37.4
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.9e-92 344.4 514 37.5
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 3.3e-92 343.6 514 37.5
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 4.3e-92 343.2 560 37.9
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 5.6e-92 342.8 525 37.7
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 7.3e-92 342.4 511 37.2
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 9.6e-92 342.0 516 36.8
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 2.1e-91 340.9 520 38.1
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 2.1e-91 340.9 517 36.9
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 2.8e-91 340.5 504 38.1
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.8e-90 337.8 514 37.2
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 3.1e-90 337.0 544 36.6
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.0e-90 336.7 540 34.6
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 8.9e-90 335.5 568 36.3
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.2e-89 335.1 540 34.6
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 2.6e-89 334.0 549 35.3
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.6e-89 334.0 533 35.1
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.4e-89 333.2 540 34.4
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.4e-89 333.2 489 38.9
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 2.9e-88 330.5 555 35.9
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 3.8e-88 330.1 587 35.4
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 3.0e-85 320.5 513 36.5
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 8.7e-85 318.9 411 40.9
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 2.8e-83 313.9 474 37.1
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 4.8e-83 313.2 555 34.2
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 1.8e-82 311.2 523 34.4
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 2.4e-82 310.8 607 32.8
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.8e-80 303.5 426 40.4
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.9e-80 303.1 344 45.3
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 4.2e-79 300.1 346 43.9
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 7.9e-78 295.8 450 37.6
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.5e-76 290.8 454 38.1
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.4e-74 285.0 548 34.1
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.0e-69 268.9 422 36.5
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 5.1e-69 266.5 740 27.4
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.6e-62 245.0 287 43.2
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.7e-59 233.8 513 30.2
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 8.2e-59 232.6 285 42.5
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.4e-58 231.9 352 37.8
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 1.4e-58 231.9 516 30.2
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.8e-50 204.9 418 30.9
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.4e-42 177.9 430 28.1
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 4.7e-30 137.1 91 67.0
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 4.1e-26 124.0 172 34.9
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.0e-13 80.9 256 28.1
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 6.8e-13 80.1 112 37.5
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 7.5e-12 76.6 74 44.6
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 3.5e-09 67.8 89 47.2
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 1.0e-08 66.2 132 32.6
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.9e-07 62.0 92 42.4


User provided reference genes

Program Settings