Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.2e-303 1045.8 548 100.0
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 3.9e-17 94.0 192 37.5
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 4.3e-16 90.5 175 36.0
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 4.0e-14 84.0 217 32.3
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.5e-13 82.0 187 33.7
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 4.5e-13 80.5 185 33.5
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 7.6e-13 79.7 182 34.1
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 9.9e-13 79.3 201 31.3
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 9.9e-13 79.3 183 36.6
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 9.9e-13 79.3 189 30.7
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 9.9e-13 79.3 181 33.1
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.7e-12 78.6 209 33.0
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 1.7e-12 78.6 183 32.8
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.2e-12 78.2 175 33.7
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 2.2e-12 78.2 178 34.8
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 2.2e-12 78.2 182 33.5
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.9e-12 77.8 205 31.7
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 3.8e-12 77.4 177 34.5
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 4.9e-12 77.0 175 31.4
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.9e-12 77.0 205 31.7
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 4.9e-12 77.0 210 31.9
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 4.9e-12 77.0 204 29.4
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 6.4e-12 76.6 205 31.7
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 8.4e-12 76.3 173 31.8
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 8.4e-12 76.3 166 31.3
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 8.4e-12 76.3 191 32.5
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.1e-11 75.9 204 31.4
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.1e-11 75.9 171 32.2
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 1.1e-11 75.9 160 35.0
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.4e-11 75.5 181 32.0
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 1.4e-11 75.5 183 33.3
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 1.4e-11 75.5 170 34.7
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.4e-11 75.5 176 33.5
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 1.4e-11 75.5 191 33.0
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 2.4e-11 74.7 195 33.8
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.4e-11 74.7 175 33.7
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 3.2e-11 74.3 188 31.4
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 3.2e-11 74.3 171 32.7
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 3.2e-11 74.3 159 35.8
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 4.2e-11 73.9 181 31.5
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 4.2e-11 73.9 188 32.4
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.2e-11 73.9 178 33.1
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 5.5e-11 73.6 193 32.6
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 5.5e-11 73.6 184 30.4
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 5.5e-11 73.6 172 35.5
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 7.1e-11 73.2 184 31.5
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 7.1e-11 73.2 181 30.9
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 7.1e-11 73.2 166 34.3
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 9.3e-11 72.8 180 31.7
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.2e-10 72.4 168 32.1
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.6e-10 72.0 181 30.4
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 2.1e-10 71.6 181 30.9
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 2.7e-10 71.2 181 30.9
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 2.7e-10 71.2 195 31.3
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 2.7e-10 71.2 180 31.7
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 2.7e-10 71.2 180 33.9
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 3.5e-10 70.9 195 31.3
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 3.5e-10 70.9 183 31.1
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 3.5e-10 70.9 516 26.0
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.5e-10 70.9 185 34.1
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 3.5e-10 70.9 184 32.1
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 4.6e-10 70.5 183 34.4
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.6e-10 70.5 198 31.3
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 4.6e-10 70.5 170 33.5
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 6.0e-10 70.1 165 32.1
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 6.0e-10 70.1 165 32.1
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 6.0e-10 70.1 168 33.9
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.0e-09 69.3 170 32.4
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.3e-09 68.9 160 33.1
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.8e-09 68.6 202 31.7
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 2.3e-09 68.2 182 30.2
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 3.0e-09 67.8 171 33.9
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.9e-09 67.4 166 30.7
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 3.9e-09 67.4 514 25.5
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 3.9e-09 67.4 179 30.7
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 5.1e-09 67.0 188 27.7
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 5.1e-09 67.0 175 33.1
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 5.1e-09 67.0 178 30.9
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.1e-08 65.9 166 30.7
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.1e-08 65.9 161 32.9
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.5e-08 65.5 172 30.8
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 1.9e-08 65.1 169 31.4
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 2.5e-08 64.7 180 29.4
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 3.3e-08 64.3 178 29.8
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 5.6e-08 63.5 169 30.8
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.6e-07 62.0 474 24.1
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.6e-07 62.0 524 23.7
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.6e-07 62.0 190 32.1
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 2.1e-07 61.6 507 24.1
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 2.1e-07 61.6 548 23.2
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.8e-07 61.2 528 23.9
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 8.1e-07 59.7 531 23.9
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 1.1e-06 59.3 544 23.9
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.1e-06 59.3 553 23.9
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 1.4e-06 58.9 545 23.9
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.8e-06 58.5 523 23.7
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 3.1e-06 57.8 489 22.9
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 4.0e-06 57.4 522 23.8
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 5.3e-06 57.0 520 23.8


User provided reference genes

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