Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024496 Carpinus fangiana HOM05D003117 ORTHO05D123009 0.0e+00 1405.6 678 100.0
Cfa022047 Carpinus fangiana HOM05D001043 ORTHO05D126607 3.1e-117 426.8 703 37.6
Nitab4.5_0007710g0050 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.1e-16 92.8 206 28.6
Nitab4.5_0013033g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 3.1e-16 91.3 214 27.6
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 2.9e-14 84.7 215 28.8
Peaxi162Scf00019g03119 Petunia axillaris HOM05D003117 ORTHO05D003612 6.5e-14 83.6 238 26.5
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 1.5e-13 82.4 249 26.9
Sabra08G0122200 Salix brachista HOM05D003117 ORTHO05D003612 1.9e-13 82.0 240 24.6
Sc25g0004180 Simmondsia chinensis HOM05D003117 ORTHO05D003612 1.9e-13 82.0 234 27.8
BcaC09g50117 Brassica carinata HOM05D003117 ORTHO05D003612 2.5e-13 81.6 224 27.2
C01p28830 Brassica napus HOM05D003117 ORTHO05D003612 2.5e-13 81.6 224 27.2
BolC1t02811H Brassica oleracea HOM05D003117 ORTHO05D003612 2.5e-13 81.6 224 27.2
BraA01t02227Z Brassica rapa HOM05D003117 ORTHO05D003612 2.5e-13 81.6 224 27.2
Carub.0210s0001 Capsella rubella HOM05D003117 ORTHO05D003612 2.5e-13 81.6 234 26.1
BcaNung00363 Brassica carinata HOM05D003117 ORTHO05D003612 3.2e-13 81.3 223 26.9
BolC6t36899H Brassica oleracea HOM05D003117 ORTHO05D003612 3.2e-13 81.3 224 27.2
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 4.2e-13 80.9 238 26.5
A05p16700 Brassica napus HOM05D003117 ORTHO05D003612 5.5e-13 80.5 224 28.6
BcaC08g44280 Brassica carinata HOM05D003117 ORTHO05D003612 7.2e-13 80.1 224 27.2
C06p16990 Brassica napus HOM05D003117 ORTHO05D003612 7.2e-13 80.1 224 27.2
BraA05t20573Z Brassica rapa HOM05D003117 ORTHO05D003612 7.2e-13 80.1 224 28.6
Nitab4.5_0001856g0040 Nicotiana tabacum HOM05D003117 ORTHO05D003612 7.2e-13 80.1 238 26.9
Zm00001eb048000 Zea mays HOM05D003117 ORTHO05D003612 7.2e-13 80.1 464 21.8
Aa31LG9G2760 Aethionema arabicum HOM05D003117 ORTHO05D003612 1.6e-12 79.0 235 26.0
Carub.0003s2319 Capsella rubella HOM05D003117 ORTHO05D003612 2.1e-12 78.6 234 25.6
Sopen03g001380 Solanum pennellii HOM05D003117 ORTHO05D003612 2.7e-12 78.2 224 27.7
Sopen04g019770 Solanum pennellii HOM05D003475 ORTHO05D004155 2.7e-12 78.2 390 23.8
ATR0665G110 Amborella trichopoda HOM05D003117 ORTHO05D003612 3.6e-12 77.8 228 27.2
Lj6C653G15 Lonicera japonica HOM05D003117 ORTHO05D003612 3.6e-12 77.8 238 25.2
Phvul.007G279900 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 3.6e-12 77.8 235 25.1
TAR633G0296 Trochodendron aralioides HOM05D003117 ORTHO05D003612 3.6e-12 77.8 231 25.5
MD16G1205300 Malus domestica HOM05D003117 ORTHO05D003612 4.7e-12 77.4 235 25.1
Oeu064216.1 Olea europaea HOM05D003117 ORTHO05D003612 4.7e-12 77.4 223 27.4
CAN.G749.36 Capsicum annuum HOM05D003117 ORTHO05D003612 6.1e-12 77.0 223 27.4
Solyc03g005340.4 Solanum lycopersicum HOM05D003117 ORTHO05D003612 6.1e-12 77.0 224 27.7
TWI09G1508 Tripterygium wilfordii HOM05D003117 ORTHO05D003612 6.1e-12 77.0 229 25.8
Lalb_Chr01g0020821 Lupinus albus HOM05D003117 ORTHO05D003612 8.0e-12 76.6 241 24.5
SalBow2G0949 Salvia bowleyana HOM05D003117 ORTHO05D003612 8.0e-12 76.6 234 24.8
Solyc04g049630.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 8.0e-12 76.6 390 23.8
Ah.01g008550 Amaranthus hybridus HOM05D003117 ORTHO05D003612 1.0e-11 76.3 241 24.9
COL.COLO4_15764 Corchorus olitorius HOM05D003117 ORTHO05D003612 1.0e-11 76.3 251 23.9
Peaxi162Scf00578g00525 Petunia axillaris HOM05D003117 ORTHO05D003612 1.0e-11 76.3 236 25.4
VMungo0720G0420 Vigna mungo HOM05D003117 ORTHO05D003612 1.0e-11 76.3 235 24.7
GSVIVG01018091001 Vitis vinifera HOM05D003117 ORTHO05D003612 1.0e-11 76.3 223 26.0
MD16G1205600 Malus domestica HOM05D003117 ORTHO05D003612 1.4e-11 75.9 234 25.6
TPR.G22486 Trifolium pratense HOM05D003117 ORTHO05D003612 1.4e-11 75.9 235 25.1
Prupe.1G026800 Prunus persica HOM05D003117 ORTHO05D003612 1.8e-11 75.5 232 25.9
Actinidia04495 Actinidia chinensis HOM05D003117 ORTHO05D003612 3.0e-11 74.7 248 24.2
CANSAT78G2141 Cannabis sativa HOM05D003117 ORTHO05D003612 3.0e-11 74.7 243 25.1
Potri.008G160400 Populus trichocarpa HOM05D003117 ORTHO05D003612 3.0e-11 74.7 249 23.7
Cc03_g04630 Coffea canephora HOM05D003117 ORTHO05D003612 4.0e-11 74.3 248 23.4
Nn1g02533 Nelumbo nucifera HOM05D003117 ORTHO05D003612 4.0e-11 74.3 234 26.1
PSO832G4175 Papaver somniferum HOM05D003117 ORTHO05D003612 5.2e-11 73.9 236 25.4
PGSC0003DMG400013444 Solanum tuberosum HOM05D003117 ORTHO05D003612 5.2e-11 73.9 224 26.8
THA.LOC104822254 Tarenaya hassleriana HOM05D003117 ORTHO05D003612 5.2e-11 73.9 233 25.8
Dinv44609 Davidia involucrata HOM05D003117 ORTHO05D003612 6.7e-11 73.6 214 26.2
Rhsim04G0195100 Rhododendron simsii HOM05D003117 ORTHO05D003612 6.7e-11 73.6 249 22.9
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 6.7e-11 73.6 228 25.4
Cfa008401 Carpinus fangiana HOM05D003117 ORTHO05D003612 1.2e-10 72.8 238 23.9
HPP92_024855 Vanilla planifolia HOM05D003117 ORTHO05D003612 1.2e-10 72.8 234 23.9
Aqoxy5G00365 Aquilegia oxysepala HOM05D003117 ORTHO05D003612 1.5e-10 72.4 222 26.6
Ciclev10004325m.g Citrus clementina HOM05D003117 ORTHO05D003612 1.5e-10 72.4 217 24.4
DCAR_027265 Daucus carota HOM05D003117 ORTHO05D003612 1.5e-10 72.4 204 26.0
Duzib151G0985 Durio zibethinus HOM05D003117 ORTHO05D003612 1.5e-10 72.4 233 23.6
Glyma.18G098400 Glycine max HOM05D003475 ORTHO05D004155 1.5e-10 72.4 286 26.2
Phvul.006G042700 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 1.5e-10 72.4 277 26.0
CiPaw.01G192600 Carya illinoinensis HOM05D003117 ORTHO05D003612 2.0e-10 72.0 249 24.5
Gohir.A09G221900 Gossypium hirsutum HOM05D003117 ORTHO05D003612 2.0e-10 72.0 231 24.2
Gohir.D09G224000 Gossypium hirsutum HOM05D003117 ORTHO05D003612 2.0e-10 72.0 220 24.1
PSO210G5858 Papaver somniferum HOM05D003117 ORTHO05D003612 2.0e-10 72.0 236 25.0
Sed0002710 Sechium edule HOM05D003117 ORTHO05D003612 2.0e-10 72.0 241 24.9
MSTRG.9934 Avicennia marina HOM05D003117 ORTHO05D003612 2.6e-10 71.6 215 25.6
SMO361G0429 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 2.6e-10 71.6 452 22.6
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 4.4e-10 70.9 247 24.3
AUR62022463 Chenopodium quinoa HOM05D003475 ORTHO05D004155 4.4e-10 70.9 434 23.5
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 4.4e-10 70.9 236 25.8
Solyc09g083120.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 4.4e-10 70.9 220 25.0
VMungo0540G0248 Vigna mungo HOM05D003475 ORTHO05D004155 4.4e-10 70.9 469 22.6
Gorai.006G245500 Gossypium raimondii HOM05D003117 ORTHO05D003612 5.7e-10 70.5 220 24.1
PSO210G4691 Papaver somniferum HOM05D003117 ORTHO05D003612 5.7e-10 70.5 237 24.5
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 7.5e-10 70.1 214 26.2
PSO210G4228 Papaver somniferum HOM05D003117 ORTHO05D003612 7.5e-10 70.1 221 26.7
Peaxi162Scf00788g00312 Petunia axillaris HOM05D003117 ORTHO05D003612 7.5e-10 70.1 226 24.3
PRCOL_00005577 Prasinoderma coloniale HOM05D003475 ORTHO05D004155 7.5e-10 70.1 549 20.2
PGR142G3261 Punica granatum HOM05D003117 ORTHO05D003612 7.5e-10 70.1 217 25.3
arahy.Tifrunner.gnm1.ann1.VT20D2 Arachis hypogaea HOM05D003475 ORTHO05D004155 9.7e-10 69.7 298 25.2
arahy.Tifrunner.gnm1.ann1.W6GX7N Arachis hypogaea HOM05D003475 ORTHO05D004155 9.7e-10 69.7 298 25.2
CSS0025557 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 9.7e-10 69.7 232 22.8
CSS0037722 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 9.7e-10 69.7 232 22.8
Haze_11267 Corylus avellana HOM05D003117 ORTHO05D003612 9.7e-10 69.7 244 23.8
MD13G1203600 Malus domestica HOM05D003117 ORTHO05D003612 9.7e-10 69.7 232 24.6
Manes.18G034500 Manihot esculenta HOM05D003475 ORTHO05D004155 9.7e-10 69.7 317 25.2
HanXRQChr12g0363751 Helianthus annuus HOM05D003117 ORTHO05D003612 1.3e-09 69.3 215 25.1
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.7e-09 68.9 247 23.9
Migut.G00413 Erythranthe guttata HOM05D003117 ORTHO05D003612 1.7e-09 68.9 223 25.6
Psat6g102200 Pisum sativum HOM05D003117 ORTHO05D003612 1.7e-09 68.9 236 24.6
Thecc.04G243500 Theobroma cacao HOM05D003117 ORTHO05D003612 1.7e-09 68.9 249 23.3
Lalb_Chr03g0037941 Lupinus albus HOM05D003117 ORTHO05D003612 2.2e-09 68.6 235 25.5
Atru.chr13.624 Acer truncatum HOM05D003475 ORTHO05D004155 2.8e-09 68.2 282 25.2
CiPaw.15G063700 Carya illinoinensis HOM05D003475 ORTHO05D004155 2.8e-09 68.2 230 27.4
AUR62040061 Chenopodium quinoa HOM05D003475 ORTHO05D004155 2.8e-09 68.2 282 24.5
Os10g0415800 Oryza sativa ssp. japonica HOM05D003117 ORTHO05D003612 2.8e-09 68.2 214 24.3
Sopen09g032000 Solanum pennellii HOM05D003117 ORTHO05D003612 2.8e-09 68.2 220 24.5
Glyma.10G001000 Glycine max HOM05D003117 ORTHO05D003612 3.7e-09 67.8 234 24.4
MBI11_g15904_MAGBIO Magnolia biondii HOM05D003117 ORTHO05D003612 3.7e-09 67.8 215 24.2
Hund06426 Selenicereus undatus HOM05D003117 ORTHO05D003612 3.7e-09 67.8 468 21.8
Thecc.08G013900 Theobroma cacao HOM05D003475 ORTHO05D004155 3.7e-09 67.8 315 22.5
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 4.8e-09 67.4 322 25.2
DCAR_030706 Daucus carota HOM05D003117 ORTHO05D003612 4.8e-09 67.4 214 24.8
Sabra08G0122300 Salix brachista HOM05D003117 ORTHO05D003612 4.8e-09 67.4 259 23.2
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 6.3e-09 67.0 492 22.8
Migut.C00608 Erythranthe guttata HOM05D003475 ORTHO05D004155 6.3e-09 67.0 451 23.1
Eucgr.H00221 Eucalyptus grandis HOM05D003117 ORTHO05D003612 6.3e-09 67.0 242 22.7
Lsat_1_v5_gn_5_67900 Lactuca sativa HOM05D003117 ORTHO05D003612 6.3e-09 67.0 233 24.5
VMungo0720G0109 Vigna mungo HOM05D003117 ORTHO05D003612 6.3e-09 67.0 247 24.7
QL06p014983 Quercus lobata HOM05D003117 ORTHO05D003612 8.2e-09 66.6 251 23.5
EL10Ac1g01808 Beta vulgaris HOM05D003475 ORTHO05D004155 1.4e-08 65.9 207 27.1
Nitab4.5_0007585g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.4e-08 65.9 215 23.7
Lsat_1_v5_gn_5_67880 Lactuca sativa HOM05D003117 ORTHO05D003612 1.8e-08 65.5 225 23.6
vmacro08397 Vaccinium macrocarpon HOM05D003117 ORTHO05D003612 1.8e-08 65.5 219 24.2
COL.COLO4_26452 Corchorus olitorius HOM05D003475 ORTHO05D004155 2.4e-08 65.1 282 23.4
Medtr5g042410 Medicago truncatula HOM05D003117 ORTHO05D003612 3.1e-08 64.7 235 24.7
HPP92_004258 Vanilla planifolia HOM05D003475 ORTHO05D004155 5.3e-08 63.9 313 24.0
ClCG05G019590 Citrullus lanatus HOM05D003475 ORTHO05D004155 7.0e-08 63.5 210 26.2
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 7.0e-08 63.5 228 25.9
CDE06G0682 Ceratophyllum demersum HOM05D003117 ORTHO05D003612 9.1e-08 63.2 202 25.2
Lj6g0027326 Lotus japonicus HOM05D003475 ORTHO05D004155 1.2e-07 62.8 231 26.8
Ah.11g043410 Amaranthus hybridus HOM05D003475 ORTHO05D004155 1.6e-07 62.4 275 24.0
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 1.6e-07 62.4 463 20.5
Cfa024138 Carpinus fangiana HOM05D003117 ORTHO05D003612 2.0e-07 62.0 219 23.3
DCAR_008786 Daucus carota HOM05D003475 ORTHO05D004155 2.0e-07 62.0 209 25.4
SalBow2G2395 Salvia bowleyana HOM05D003117 ORTHO05D003612 2.7e-07 61.6 436 22.9
Sed0005929 Sechium edule HOM05D003475 ORTHO05D004155 3.5e-07 61.2 260 25.4
Aqoxy6G01420 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 5.9e-07 60.5 274 23.0
Cre05.g241650 Chlamydomonas reinhardtii HOM05D003117 ORTHO05D003612 1.3e-06 59.3 248 25.4
AT5G36210 Arabidopsis thaliana HOM05D003475 ORTHO05D004155 2.2e-06 58.5 209 22.0
Cc10_g03900 Coffea canephora HOM05D003475 ORTHO05D004155 5.0e-06 57.4 254 27.6
PSO675G9051 Papaver somniferum HOM05D003475 ORTHO05D004155 5.0e-06 57.4 170 27.1
Sc02g0006850 Simmondsia chinensis HOM05D003475 ORTHO05D004155 5.0e-06 57.4 212 25.5
Os06g0215400 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 8.5e-06 56.6 209 24.4


User provided reference genes

Program Settings