Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 8.1e-108 393.7 187 100.0
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 1.2e-53 213.8 179 57.0
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 1.2e-53 213.8 182 57.7
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 4.4e-53 211.8 178 57.9
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 9.8e-53 210.7 178 56.7
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 1.7e-52 209.9 178 57.3
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 2.2e-52 209.5 178 56.2
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 2.8e-52 209.1 178 56.7
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 3.7e-52 208.8 178 56.2
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 3.7e-52 208.8 179 55.9
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 3.7e-52 208.8 178 56.7
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 4.8e-52 208.4 178 56.7
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 6.3e-52 208.0 179 56.4
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 6.3e-52 208.0 187 55.6
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 6.3e-52 208.0 178 56.2
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 6.3e-52 208.0 178 56.2
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 1.1e-51 207.2 179 56.4
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 1.1e-51 207.2 184 53.8
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 1.1e-51 207.2 179 55.3
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 1.1e-51 207.2 179 56.4
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 1.4e-51 206.8 179 55.3
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 1.4e-51 206.8 178 56.2
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 2.4e-51 206.1 179 55.9
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 2.4e-51 206.1 178 56.2
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 3.1e-51 205.7 179 55.9
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 3.1e-51 205.7 178 55.6
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 4.1e-51 205.3 179 55.3
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 7.0e-51 204.5 179 54.7
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 7.0e-51 204.5 178 56.2
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 7.0e-51 204.5 178 55.6
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 9.1e-51 204.1 179 55.3
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 9.1e-51 204.1 180 56.7
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 1.2e-50 203.8 178 54.5
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 1.2e-50 203.8 178 54.5
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 1.2e-50 203.8 178 55.6
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 1.6e-50 203.4 178 56.2
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.6e-50 203.4 179 56.4
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 1.6e-50 203.4 183 55.7
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 2.0e-50 203.0 178 56.2
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 2.0e-50 203.0 178 55.1
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 2.0e-50 203.0 178 55.6
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 2.7e-50 202.6 178 55.6
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 2.7e-50 202.6 178 55.6
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 2.7e-50 202.6 178 55.1
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 2.7e-50 202.6 178 54.5
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 3.5e-50 202.2 179 55.3
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 4.5e-50 201.8 177 55.4
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 4.5e-50 201.8 178 54.5
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 4.5e-50 201.8 178 55.1
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 5.9e-50 201.4 178 56.2
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 7.7e-50 201.1 179 54.7
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 7.7e-50 201.1 180 55.6
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 7.7e-50 201.1 179 54.2
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 7.7e-50 201.1 177 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 1.0e-49 200.7 184 54.3
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 1.0e-49 200.7 175 55.4
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 1.7e-49 199.9 179 53.6
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 2.2e-49 199.5 178 53.9
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 2.2e-49 199.5 178 53.9
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 5.0e-49 198.4 179 54.7
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 1.1e-48 197.2 179 54.7
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 1.5e-48 196.8 177 54.2
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 1.9e-48 196.4 176 54.0
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 1.9e-48 196.4 179 53.1
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 4.2e-48 195.3 179 53.6
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 2.1e-47 193.0 179 54.2
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 2.7e-47 192.6 183 51.9
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 3.6e-47 192.2 178 52.8
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 8.0e-47 191.0 194 51.5
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 1.0e-46 190.7 180 54.4
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 1.0e-46 190.7 180 54.4
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 1.0e-46 190.7 180 54.4
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 1.8e-46 189.9 177 53.7
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 3.0e-46 189.1 180 53.3
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 2.0e-45 186.4 163 55.2
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 3.4e-45 185.7 192 49.5
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 9.8e-45 184.1 178 51.7
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 2.8e-44 182.6 199 47.7
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 1.8e-43 179.9 211 45.5
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 4.1e-43 178.7 230 43.9
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 1.6e-42 176.8 145 57.9
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 2.7e-42 176.0 179 50.8
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 5.0e-41 171.8 141 56.7
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 6.6e-41 171.4 179 49.7
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 8.6e-41 171.0 175 50.9
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 1.1e-40 170.6 144 58.3
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.1e-40 170.6 182 50.5
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 4.3e-40 168.7 224 43.8
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 4.3e-40 168.7 178 49.4
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 5.6e-40 168.3 179 49.2
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 2.1e-39 166.4 178 48.3
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 2.8e-39 166.0 199 44.2
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 2.8e-39 166.0 179 48.0
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.8e-39 166.0 179 48.6
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 2.8e-39 166.0 180 46.7
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 1.8e-38 163.3 176 49.4
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 2.9e-36 156.0 122 58.2
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 5.9e-34 148.3 121 55.4
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 3.0e-33 146.0 185 43.2
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 1.5e-32 143.7 242 36.8
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 1.2e-31 140.6 120 55.0
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 2.1e-31 139.8 178 43.3
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 8.0e-31 137.9 129 50.4
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 6.8e-30 134.8 179 41.3
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 2.2e-28 129.8 208 38.0
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 1.1e-27 127.5 125 49.6
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 3.2e-27 125.9 182 39.0
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 7.0e-27 124.8 123 48.8
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 1.5e-24 117.1 98 52.0
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 5.6e-24 115.2 100 49.0
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 1.6e-23 113.6 98 51.0
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 2.1e-23 113.2 98 52.0
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 2.8e-23 112.8 179 37.4
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 7.1e-19 98.2 89 50.6
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 2.7e-18 96.3 81 60.5
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 6.0e-18 95.1 80 53.8
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 2.3e-17 93.2 80 58.8
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 6.6e-17 91.7 78 60.3
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 2.5e-16 89.7 71 57.7
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 4.3e-16 89.0 78 59.0
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 4.3e-16 89.0 80 58.8
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 2.8e-15 86.3 169 35.5
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 8.1e-15 84.7 77 57.1
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 8.9e-14 81.3 70 45.7
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 1.1e-11 74.3 86 41.9
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 1.2e-10 70.9 52 65.4
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 7.8e-10 68.2 47 66.0
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 2.5e-08 63.2 56 53.6
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 3.3e-08 62.8 52 57.7
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 7.3e-08 61.6 148 32.4
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 3.1e-06 56.2 43 65.1


User provided reference genes

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