Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024478 Carpinus fangiana HOM05D003442 ORTHO05D122614 0.0e+00 1977.2 1003 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 7.9e-24 117.1 217 34.1
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 6.7e-23 114.0 232 31.9
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 7.4e-22 110.5 213 36.2
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 9.6e-22 110.2 471 25.7
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 6.2e-21 107.5 217 32.3
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.8e-20 105.9 448 25.4
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 2.4e-20 105.5 227 31.3
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 2.4e-20 105.5 205 33.2
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 2.4e-20 105.5 205 33.7
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 3.1e-20 105.1 205 33.7
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 3.1e-20 105.1 205 33.7
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 3.1e-20 105.1 205 34.6
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 4.0e-20 104.8 463 25.3
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 4.0e-20 104.8 205 34.6
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 4.0e-20 104.8 217 32.7
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 5.3e-20 104.4 205 34.1
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 5.3e-20 104.4 326 26.4
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 5.3e-20 104.4 326 26.4
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 6.9e-20 104.0 205 34.1
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 9.0e-20 103.6 217 31.8
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.5e-19 102.8 219 33.8
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 1.5e-19 102.8 205 35.1
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 1.5e-19 102.8 440 27.7
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.6e-19 102.1 205 32.7
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 2.6e-19 102.1 205 34.1
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.6e-19 102.1 214 35.0
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 3.4e-19 101.7 205 33.2
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 3.4e-19 101.7 205 34.1
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 3.4e-19 101.7 205 32.7
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 4.5e-19 101.3 455 25.7
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 4.5e-19 101.3 455 25.7
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 4.5e-19 101.3 449 26.1
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 4.5e-19 101.3 205 32.7
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.5e-19 101.3 205 32.7
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.5e-19 101.3 205 32.7
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 4.5e-19 101.3 205 32.7
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 4.5e-19 101.3 205 32.2
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 4.5e-19 101.3 205 32.7
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 4.5e-19 101.3 205 32.2
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 4.5e-19 101.3 454 25.3
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 4.5e-19 101.3 205 33.2
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 5.8e-19 100.9 455 25.7
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 5.8e-19 100.9 205 32.7
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 5.8e-19 100.9 485 23.7
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 7.6e-19 100.5 205 34.1
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 7.6e-19 100.5 205 33.2
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 7.6e-19 100.5 204 32.8
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 7.6e-19 100.5 205 33.2
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.0e-18 100.1 205 32.7
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 1.0e-18 100.1 220 31.8
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 1.0e-18 100.1 217 32.3
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 1.0e-18 100.1 448 24.8
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 1.0e-18 100.1 212 32.5
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 1.3e-18 99.8 458 25.1
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 1.3e-18 99.8 479 26.1
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 1.7e-18 99.4 205 33.2
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 1.7e-18 99.4 205 33.7
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 1.7e-18 99.4 205 32.2
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 2.2e-18 99.0 205 33.2
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 2.2e-18 99.0 205 32.2
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 2.2e-18 99.0 205 32.7
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 2.2e-18 99.0 213 32.4
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 2.2e-18 99.0 205 34.6
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 2.2e-18 99.0 205 31.7
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 2.2e-18 99.0 205 31.7
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 2.2e-18 99.0 217 32.3
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 2.9e-18 98.6 205 32.2
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 2.9e-18 98.6 205 31.7
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 2.9e-18 98.6 205 33.7
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 3.8e-18 98.2 447 25.5
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 3.8e-18 98.2 447 25.5
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 3.8e-18 98.2 447 25.5
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 3.8e-18 98.2 463 23.8
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 3.8e-18 98.2 465 23.9
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 3.8e-18 98.2 205 33.2
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 3.8e-18 98.2 210 33.3
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 3.8e-18 98.2 205 34.1
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 4.9e-18 97.8 447 24.8
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 4.9e-18 97.8 447 24.8
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 4.9e-18 97.8 205 33.2
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 4.9e-18 97.8 205 32.7
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 4.9e-18 97.8 205 32.7
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 4.9e-18 97.8 205 33.2
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 6.5e-18 97.4 213 33.3
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 6.5e-18 97.4 204 32.4
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 6.5e-18 97.4 205 33.2
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 8.4e-18 97.1 454 26.9
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 1.1e-17 96.7 446 25.8
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 1.1e-17 96.7 205 33.2
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 1.1e-17 96.7 208 32.2
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 1.4e-17 96.3 205 32.2
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.4e-17 96.3 447 24.2
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 1.9e-17 95.9 205 32.2
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 1.9e-17 95.9 205 32.2
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 1.9e-17 95.9 205 31.2
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 1.9e-17 95.9 205 32.2
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 1.9e-17 95.9 205 32.2
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 4.2e-17 94.7 205 32.7
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 4.2e-17 94.7 217 31.8
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 5.5e-17 94.4 452 25.0
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 7.1e-17 94.0 205 32.2
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 7.1e-17 94.0 205 32.2
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 7.1e-17 94.0 319 26.6
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 1.2e-16 93.2 217 30.9
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 1.2e-16 93.2 205 32.2
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 1.2e-16 93.2 456 25.0
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 1.6e-16 92.8 205 30.7
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 1.6e-16 92.8 205 31.2
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 2.7e-16 92.0 209 31.6
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 2.7e-16 92.0 453 24.1
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 2.7e-16 92.0 217 30.0
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 3.5e-16 91.7 205 32.2
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 4.6e-16 91.3 448 25.0
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 6.0e-16 90.9 453 23.4
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 7.9e-16 90.5 205 30.2
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 1.0e-15 90.1 186 31.2
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 1.3e-15 89.7 180 33.3
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 1.8e-15 89.4 453 23.8
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 6.7e-15 87.4 455 25.1
arahy.Tifrunner.gnm1.ann1.I4HYIQ Arachis hypogaea HOM05D003442 ORTHO05D004005 2.5e-14 85.5 135 37.0
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 2.5e-14 85.5 477 24.5
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 3.3e-14 85.1 169 33.1
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 3.3e-14 85.1 205 28.8
Phvul.003G250932 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 4.3e-14 84.7 141 36.9
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 4.3e-14 84.7 205 31.2
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 2.1e-13 82.4 440 24.5
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 3.7e-13 81.6 436 24.1
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 4.8e-13 81.3 148 33.1
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 4.8e-13 81.3 148 33.1
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 1.1e-12 80.1 452 24.3
Ciclev10032936m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.8e-12 79.3 135 35.6
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 3.1e-12 78.6 249 28.5
MSTRG.344 Avicennia marina HOM05D003442 ORTHO05D004005 9.0e-12 77.0 131 35.9
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 2.0e-11 75.9 149 33.6
Actinidia07921 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.0e-10 73.6 127 37.8
ATR0794G121 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.7e-10 72.8 115 39.1
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 5.0e-10 71.2 221 25.3
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 1.4e-09 69.7 205 29.3
vmacro00759 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 6.1e-08 64.3 96 38.5
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 1.8e-07 62.8 155 29.7


User provided reference genes

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