Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024390 Carpinus fangiana HOM05D003659 ORTHO05D125208 0.0e+00 1578.5 778 100.0
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 1.8e-108 397.9 655 36.9
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 1.1e-81 308.9 654 32.3
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 6.6e-10 70.5 199 29.1
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 1.9e-09 68.9 200 28.0
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 2.5e-09 68.6 204 28.9
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 4.2e-09 67.8 204 27.5
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 4.2e-09 67.8 115 36.5
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 5.5e-09 67.4 191 29.3
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 7.2e-09 67.0 203 30.5
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 7.2e-09 67.0 199 29.6
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 9.5e-09 66.6 196 28.6
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 9.5e-09 66.6 146 34.2
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.2e-08 66.2 140 34.3
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 1.2e-08 66.2 217 26.7
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 1.2e-08 66.2 104 38.5
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 1.6e-08 65.9 130 33.8
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.6e-08 65.9 106 37.7
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 2.8e-08 65.1 205 28.3
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 2.8e-08 65.1 120 36.7
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 2.8e-08 65.1 111 37.8
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 4.7e-08 64.3 103 38.8
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 4.7e-08 64.3 200 29.5
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 4.7e-08 64.3 196 28.6
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 6.1e-08 63.9 99 39.4
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 6.1e-08 63.9 203 30.0
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 6.1e-08 63.9 197 29.9
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 6.1e-08 63.9 99 39.4
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 6.1e-08 63.9 204 27.5
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 8.0e-08 63.5 112 35.7
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 8.0e-08 63.5 103 38.8
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 8.0e-08 63.5 120 35.8
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 8.0e-08 63.5 148 32.4
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.0e-07 63.2 100 39.0
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.0e-07 63.2 100 39.0
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.0e-07 63.2 117 35.0
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.0e-07 63.2 99 39.4
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.0e-07 63.2 99 39.4
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.0e-07 63.2 99 39.4
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.0e-07 63.2 198 28.8
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.0e-07 63.2 237 27.8
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.4e-07 62.8 100 37.0
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.4e-07 62.8 100 37.0
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 1.4e-07 62.8 143 35.7
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 1.4e-07 62.8 117 35.9
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 1.4e-07 62.8 115 33.0
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.4e-07 62.8 114 36.0
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 1.8e-07 62.4 195 28.7
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 1.8e-07 62.4 97 40.2
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.8e-07 62.4 195 28.7
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.8e-07 62.4 99 38.4
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 1.8e-07 62.4 206 27.2
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 1.8e-07 62.4 201 28.4
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.8e-07 62.4 201 26.4
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 2.3e-07 62.0 100 37.0
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 2.3e-07 62.0 120 33.3
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 2.3e-07 62.0 97 39.2
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 2.3e-07 62.0 135 34.8
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.3e-07 62.0 100 37.0
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.3e-07 62.0 100 37.0
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.0e-07 61.6 100 37.0
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.0e-07 61.6 166 28.3
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 3.0e-07 61.6 100 37.0
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 3.0e-07 61.6 97 36.1
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 3.0e-07 61.6 100 38.0
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 3.0e-07 61.6 121 33.1
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 3.0e-07 61.6 100 37.0
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 3.0e-07 61.6 168 31.5
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 4.0e-07 61.2 100 36.0
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 4.0e-07 61.2 230 26.5
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 4.0e-07 61.2 108 36.1
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 4.0e-07 61.2 195 30.3
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 4.0e-07 61.2 116 35.3
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 4.0e-07 61.2 141 36.2
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 5.2e-07 60.8 197 29.4
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 5.2e-07 60.8 121 33.1
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 5.2e-07 60.8 183 29.0
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 5.2e-07 60.8 100 36.0
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 5.2e-07 60.8 100 37.0
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 5.2e-07 60.8 108 34.3
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 5.2e-07 60.8 200 27.5
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 6.8e-07 60.5 100 36.0
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 6.8e-07 60.5 120 35.8
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 6.8e-07 60.5 98 37.8
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 6.8e-07 60.5 116 35.3
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 6.8e-07 60.5 100 36.0
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 6.8e-07 60.5 130 33.8
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 6.8e-07 60.5 100 38.0
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 8.9e-07 60.1 97 38.1
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 8.9e-07 60.1 97 38.1
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 8.9e-07 60.1 111 30.6
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 8.9e-07 60.1 118 35.6
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.2e-06 59.7 116 33.6
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.2e-06 59.7 97 37.1
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 1.2e-06 59.7 120 33.3
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 1.2e-06 59.7 191 27.2
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 1.5e-06 59.3 197 29.4
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.5e-06 59.3 100 35.0
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 1.5e-06 59.3 97 38.1
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 1.5e-06 59.3 97 38.1
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 1.5e-06 59.3 95 38.9
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 1.5e-06 59.3 97 38.1
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 1.5e-06 59.3 100 32.0
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 2.6e-06 58.5 97 36.1
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 2.6e-06 58.5 95 37.9
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 2.6e-06 58.5 104 33.7
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 3.4e-06 58.2 132 30.3
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 3.4e-06 58.2 85 40.0
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 3.4e-06 58.2 116 35.3
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 3.4e-06 58.2 118 32.2
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 4.4e-06 57.8 121 33.1
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 4.4e-06 57.8 85 41.2
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 4.4e-06 57.8 114 36.0
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 4.4e-06 57.8 114 36.0
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 4.4e-06 57.8 110 36.4
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 5.7e-06 57.4 133 31.6
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 7.5e-06 57.0 100 35.0
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 7.5e-06 57.0 110 34.5


User provided reference genes

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