Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 6.0e-135 484.2 244 100.0
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 5.2e-22 109.0 172 39.5
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 2.6e-21 106.7 169 40.8
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 3.4e-21 106.3 172 39.0
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 4.4e-21 105.9 168 38.1
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 5.8e-21 105.5 169 40.8
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 5.8e-21 105.5 180 36.7
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.3e-20 104.4 196 34.2
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.2e-20 103.6 169 39.1
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 2.9e-20 103.2 180 36.1
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 2.9e-20 103.2 168 37.5
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 3.7e-20 102.8 169 39.1
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 3.7e-20 102.8 169 37.9
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.7e-20 102.8 169 37.9
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 3.7e-20 102.8 169 37.9
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 4.9e-20 102.4 178 37.1
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 4.9e-20 102.4 169 39.6
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 6.4e-20 102.1 169 37.3
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 6.4e-20 102.1 172 36.6
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 6.4e-20 102.1 172 37.2
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 8.3e-20 101.7 168 38.1
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 8.3e-20 101.7 178 36.5
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 8.3e-20 101.7 212 34.4
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 8.3e-20 101.7 212 34.4
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 8.3e-20 101.7 169 37.9
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 8.3e-20 101.7 172 37.2
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.1e-19 101.3 168 37.5
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.1e-19 101.3 169 39.1
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.1e-19 101.3 172 37.2
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 1.4e-19 100.9 169 37.9
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.4e-19 100.9 172 37.2
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.4e-19 100.9 172 37.2
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.4e-19 100.9 172 36.0
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.9e-19 100.5 169 37.9
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.9e-19 100.5 169 37.9
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.9e-19 100.5 169 38.5
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.9e-19 100.5 172 37.2
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.9e-19 100.5 169 37.9
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 1.9e-19 100.5 169 37.9
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.9e-19 100.5 172 36.0
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.9e-19 100.5 172 37.2
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 2.4e-19 100.1 168 36.9
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 2.4e-19 100.1 173 37.0
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 2.4e-19 100.1 169 38.5
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 2.4e-19 100.1 169 38.5
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.4e-19 100.1 169 37.3
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.4e-19 100.1 169 40.2
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 2.4e-19 100.1 169 38.5
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.4e-19 100.1 169 37.9
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 3.2e-19 99.8 169 37.9
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.2e-19 99.8 169 37.9
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.2e-19 99.8 169 37.9
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 4.1e-19 99.4 169 37.9
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 4.1e-19 99.4 169 35.5
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 5.4e-19 99.0 169 36.7
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 5.4e-19 99.0 169 37.3
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 5.4e-19 99.0 181 35.9
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 5.4e-19 99.0 169 37.9
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 5.4e-19 99.0 169 37.9
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 5.4e-19 99.0 172 37.8
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 5.4e-19 99.0 169 37.3
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 5.4e-19 99.0 172 37.2
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 5.4e-19 99.0 172 35.5
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 5.4e-19 99.0 163 39.9
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 5.4e-19 99.0 163 39.9
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 7.0e-19 98.6 169 37.3
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 7.0e-19 98.6 169 38.5
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 7.0e-19 98.6 169 38.5
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 9.2e-19 98.2 173 37.0
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 9.2e-19 98.2 173 36.4
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 9.2e-19 98.2 169 38.5
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 9.2e-19 98.2 212 34.0
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 9.2e-19 98.2 169 37.3
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.2e-18 97.8 169 37.9
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 1.2e-18 97.8 213 32.4
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.2e-18 97.8 169 37.3
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.2e-18 97.8 173 36.4
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.2e-18 97.8 171 35.7
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.2e-18 97.8 170 37.6
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.2e-18 97.8 172 37.2
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 1.6e-18 97.4 168 37.5
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 1.6e-18 97.4 168 37.5
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 1.6e-18 97.4 173 35.8
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 1.6e-18 97.4 163 39.9
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.6e-18 97.4 169 37.9
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 2.1e-18 97.1 173 35.8
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 2.1e-18 97.1 173 35.8
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 2.1e-18 97.1 173 35.8
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.1e-18 97.1 173 37.0
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 2.1e-18 97.1 169 37.3
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 2.1e-18 97.1 167 35.9
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 2.1e-18 97.1 169 37.3
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.1e-18 97.1 168 36.3
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 2.7e-18 96.7 168 35.7
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 2.7e-18 96.7 169 39.1
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.7e-18 96.7 169 36.7
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 2.7e-18 96.7 169 36.7
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 3.5e-18 96.3 175 35.4
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 3.5e-18 96.3 169 37.3
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 4.6e-18 95.9 172 36.0
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 4.6e-18 95.9 173 35.8
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 4.6e-18 95.9 173 35.8
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 4.6e-18 95.9 173 35.8
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 4.6e-18 95.9 169 37.9
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 4.6e-18 95.9 168 34.5
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 4.6e-18 95.9 168 35.7
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 4.6e-18 95.9 172 36.6
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 6.0e-18 95.5 168 35.1
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 7.8e-18 95.1 173 35.3
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 7.8e-18 95.1 173 35.3
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.0e-17 94.7 168 37.5
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.3e-17 94.4 173 34.7
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.3e-17 94.4 169 36.7
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-17 94.0 198 33.3
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.7e-17 94.0 173 36.4
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 3.9e-17 92.8 186 33.9
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 8.6e-17 91.7 173 34.7
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 8.6e-17 91.7 173 34.7
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 8.6e-17 91.7 170 34.7
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 8.6e-17 91.7 158 38.0
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.5e-16 90.9 170 38.2
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 2.5e-16 90.1 168 35.7
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 3.3e-16 89.7 163 37.4
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 3.3e-16 89.7 166 35.5
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 4.3e-16 89.4 171 34.5
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-15 87.8 163 36.2
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-15 87.8 167 35.3
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.5e-13 80.9 165 35.2
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 2.0e-13 80.5 205 32.2
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.2e-12 77.0 152 34.2
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 1.2e-10 71.2 169 32.0
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 3.5e-10 69.7 113 36.3
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.5e-10 69.7 75 44.0
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 6.6e-09 65.5 75 40.0
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 8.6e-09 65.1 113 35.4
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.5e-08 63.5 144 32.6
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 4.3e-08 62.8 186 30.1
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 7.3e-08 62.0 114 36.0
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-07 59.7 58 50.0
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 3.6e-07 59.7 166 31.9
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 8.1e-07 58.5 146 30.8
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 8.1e-07 58.5 159 30.8
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.8e-06 57.4 179 31.8


User provided reference genes

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