Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.6e-228 795.0 397 100.0
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 1.4e-24 118.2 178 37.6
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.4e-21 108.2 177 39.0
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 4.2e-21 106.7 172 37.8
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 7.2e-21 105.9 201 35.3
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.6e-20 104.8 172 37.2
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.1e-20 104.4 175 38.3
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 4.7e-20 103.2 172 36.6
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 6.1e-20 102.8 177 36.7
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 6.1e-20 102.8 173 38.7
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 7.9e-20 102.4 172 36.6
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.0e-19 102.1 172 37.2
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.0e-19 102.1 172 37.2
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 1.4e-19 101.7 172 37.8
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.8e-19 101.3 175 36.0
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.8e-19 101.3 175 36.6
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 2.3e-19 100.9 179 37.4
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 3.0e-19 100.5 177 36.7
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 3.0e-19 100.5 177 36.7
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 3.0e-19 100.5 172 36.6
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 3.9e-19 100.1 173 38.2
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 3.9e-19 100.1 172 37.2
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 3.9e-19 100.1 172 35.5
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 3.9e-19 100.1 172 37.2
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 3.9e-19 100.1 172 37.2
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 5.1e-19 99.8 182 34.6
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 5.1e-19 99.8 182 34.6
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 5.1e-19 99.8 182 34.6
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 5.1e-19 99.8 172 36.6
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 6.7e-19 99.4 176 36.9
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 6.7e-19 99.4 179 34.6
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 6.7e-19 99.4 172 36.0
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 8.8e-19 99.0 172 35.5
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 8.8e-19 99.0 186 36.6
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 8.8e-19 99.0 176 36.4
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.1e-18 98.6 172 36.0
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.5e-18 98.2 172 36.0
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.0e-18 97.8 172 34.3
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 2.6e-18 97.4 172 33.7
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 2.6e-18 97.4 172 36.0
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.6e-18 97.4 172 36.0
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 3.3e-18 97.1 172 35.5
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 3.3e-18 97.1 173 37.6
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.3e-18 97.1 172 35.5
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 4.4e-18 96.7 172 37.2
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 5.7e-18 96.3 172 36.0
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 5.7e-18 96.3 172 35.5
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 7.4e-18 95.9 172 35.5
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 7.4e-18 95.9 172 37.2
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 7.4e-18 95.9 172 36.6
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 9.7e-18 95.5 172 34.9
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 9.7e-18 95.5 178 35.4
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.3e-17 95.1 172 36.6
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.3e-17 95.1 172 36.0
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.3e-17 95.1 172 35.5
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.3e-17 95.1 176 34.7
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 1.3e-17 95.1 173 37.0
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.7e-17 94.7 172 35.5
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 2.2e-17 94.4 172 37.8
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 2.2e-17 94.4 181 34.8
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 2.8e-17 94.0 176 34.1
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 2.8e-17 94.0 172 37.2
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.8e-17 94.0 172 36.0
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 2.8e-17 94.0 175 32.6
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.8e-17 94.0 181 35.9
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 3.7e-17 93.6 172 33.7
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 3.7e-17 93.6 172 36.0
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 3.7e-17 93.6 172 36.0
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 3.7e-17 93.6 172 36.0
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 3.7e-17 93.6 176 36.4
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 3.7e-17 93.6 176 36.4
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 3.7e-17 93.6 172 34.3
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 4.8e-17 93.2 185 36.8
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 4.8e-17 93.2 185 36.8
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 4.8e-17 93.2 185 36.8
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 4.8e-17 93.2 185 36.8
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 6.3e-17 92.8 176 36.4
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 6.3e-17 92.8 172 34.9
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 6.3e-17 92.8 173 35.3
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 1.1e-16 92.0 173 34.1
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.4e-16 91.7 185 36.2
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.4e-16 91.7 185 36.2
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.4e-16 91.7 194 33.5
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 1.4e-16 91.7 172 33.7
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 1.8e-16 91.3 172 35.5
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 2.4e-16 90.9 172 34.9
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 2.4e-16 90.9 172 34.9
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 3.1e-16 90.5 172 33.1
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 4.1e-16 90.1 189 35.4
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.3e-16 89.7 173 36.4
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 7.0e-16 89.4 175 34.9
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 7.0e-16 89.4 181 33.7
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 9.1e-16 89.0 175 36.0
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 9.1e-16 89.0 181 33.1
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 9.1e-16 89.0 175 36.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 9.1e-16 89.0 172 33.7
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 1.2e-15 88.6 172 34.9
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 2.0e-15 87.8 174 33.3
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 1.7e-14 84.7 371 25.3
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 3.8e-14 83.6 173 34.1
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 6.5e-14 82.8 173 34.1
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.9e-13 81.3 185 32.4
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.9e-13 81.3 172 32.0
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.9e-13 81.3 172 32.0
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 1.9e-13 81.3 182 30.8
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 4.2e-13 80.1 172 31.4
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.2e-13 80.1 172 31.4
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 4.2e-13 80.1 161 35.4
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 5.5e-13 79.7 159 32.1
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 9.4e-13 79.0 172 31.4
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 9.4e-13 79.0 176 35.2
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.1e-12 76.3 172 30.8
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.8e-11 74.7 119 37.8
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 3.0e-11 73.9 176 33.5
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 1.1e-10 72.0 203 28.6
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 4.4e-10 70.1 191 29.3
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 1.3e-09 68.6 130 35.4
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 3.5e-07 60.5 88 38.6
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 4.5e-07 60.1 87 37.9
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 1.3e-06 58.5 100 35.0
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 1.3e-06 58.5 92 37.0


User provided reference genes

Program Settings