Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.2e-204 716.5 400 100.0
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 8.2e-49 198.7 308 43.5
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.3e-46 191.4 318 43.7
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 5.0e-46 189.5 331 40.2
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 5.0e-46 189.5 333 41.4
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.9e-45 187.6 331 40.5
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 2.5e-45 187.2 306 41.8
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.5e-45 187.2 269 43.5
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.2e-45 186.8 311 42.8
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 4.2e-45 186.4 333 41.4
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 7.2e-45 185.7 306 42.5
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 9.4e-45 185.3 358 39.9
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 9.4e-45 185.3 307 42.3
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.1e-44 184.1 280 42.1
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 2.1e-44 184.1 311 41.2
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 2.7e-44 183.7 319 40.1
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 2.7e-44 183.7 311 40.8
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 3.6e-44 183.3 304 42.4
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 3.6e-44 183.3 305 41.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.7e-44 183.0 343 39.1
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 6.1e-44 182.6 275 44.4
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 6.1e-44 182.6 327 41.0
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 6.1e-44 182.6 309 41.7
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 6.1e-44 182.6 311 40.8
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 7.9e-44 182.2 284 46.1
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 7.9e-44 182.2 291 44.0
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.0e-43 181.8 337 39.5
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.4e-43 181.4 268 45.1
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.4e-43 181.4 312 40.7
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.8e-43 181.0 303 41.6
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.3e-43 180.6 307 41.0
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 2.3e-43 180.6 269 45.0
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.3e-43 180.6 326 42.3
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 2.3e-43 180.6 335 42.1
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 3.0e-43 180.3 313 41.5
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 3.0e-43 180.3 342 39.5
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 3.0e-43 180.3 329 39.8
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 3.0e-43 180.3 336 39.3
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 3.0e-43 180.3 264 43.2
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 3.9e-43 179.9 310 41.3
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.9e-43 179.9 326 41.4
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 3.9e-43 179.9 308 40.6
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 3.9e-43 179.9 303 40.6
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 3.9e-43 179.9 335 41.5
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 5.2e-43 179.5 269 42.4
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 5.2e-43 179.5 331 39.6
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 5.2e-43 179.5 309 42.4
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 5.2e-43 179.5 318 40.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 6.7e-43 179.1 305 42.3
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 6.7e-43 179.1 306 40.5
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.7e-43 179.1 334 41.3
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 8.8e-43 178.7 309 40.8
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 8.8e-43 178.7 314 41.4
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 8.8e-43 178.7 297 42.4
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 8.8e-43 178.7 288 44.8
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 8.8e-43 178.7 324 40.4
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.5e-42 177.9 267 44.2
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.0e-42 177.6 305 41.6
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 2.0e-42 177.6 312 41.0
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 2.6e-42 177.2 309 40.8
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.6e-42 177.2 305 40.7
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.6e-42 177.2 309 39.5
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 3.3e-42 176.8 268 44.4
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 4.4e-42 176.4 291 42.3
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 4.4e-42 176.4 307 40.1
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 5.7e-42 176.0 304 41.1
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.7e-42 176.0 291 42.3
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 7.4e-42 175.6 267 41.9
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 7.4e-42 175.6 312 40.7
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.4e-42 175.6 333 41.1
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 7.4e-42 175.6 310 39.7
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 7.4e-42 175.6 297 42.8
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 7.4e-42 175.6 277 41.5
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 9.7e-42 175.3 297 41.1
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 9.7e-42 175.3 329 39.2
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.3e-41 174.9 309 40.8
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.3e-41 174.9 308 41.6
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.3e-41 174.9 333 39.0
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 1.3e-41 174.9 333 40.5
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.7e-41 174.5 308 39.3
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.7e-41 174.5 311 40.2
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 2.2e-41 174.1 275 41.1
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.2e-41 174.1 309 40.1
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 2.2e-41 174.1 298 40.6
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 2.2e-41 174.1 311 39.9
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 3.7e-41 173.3 332 39.2
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 3.7e-41 173.3 332 39.2
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.7e-41 173.3 314 40.1
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 4.8e-41 172.9 316 39.9
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 4.8e-41 172.9 288 42.7
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 6.3e-41 172.6 268 43.3
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 8.2e-41 172.2 315 41.3
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 8.2e-41 172.2 328 39.3
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.4e-40 171.4 270 41.9
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.4e-40 171.4 291 41.9
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.4e-40 171.4 308 39.3
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.4e-40 171.4 335 39.1
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.4e-40 170.6 312 40.1
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 3.1e-40 170.2 273 42.9
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 3.1e-40 170.2 288 42.0
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 4.1e-40 169.9 309 39.2
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 5.3e-40 169.5 297 40.7
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 7.0e-40 169.1 325 40.0
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 7.0e-40 169.1 311 39.5
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 9.1e-40 168.7 303 39.6
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 2.6e-39 167.2 267 41.6
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 2.6e-39 167.2 318 40.3
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 4.5e-39 166.4 309 38.2
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 7.7e-39 165.6 311 39.2
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.7e-38 164.5 277 39.7
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.7e-38 164.5 317 41.0
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.2e-38 164.1 310 38.7
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.2e-38 164.1 301 39.5
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 3.8e-38 163.3 317 39.1
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 6.5e-38 162.5 310 38.4
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.9e-37 161.0 312 37.8
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.5e-37 160.6 287 40.4
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.7e-36 157.1 333 36.9
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 4.0e-35 153.3 351 34.5
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.3e-34 150.2 288 41.3
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 7.5e-34 149.1 289 39.8
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 4.8e-33 146.4 270 38.5
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 6.3e-33 146.0 266 39.5
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.8e-32 144.4 286 39.5
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.6e-31 141.4 294 39.1
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.3e-30 138.3 276 37.7
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 8.5e-30 135.6 241 39.4
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 8.0e-28 129.0 184 43.5
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.0e-26 124.4 293 34.8
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 3.4e-26 123.6 207 42.5
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 5.7e-26 122.9 160 48.8
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 2.2e-25 120.9 157 49.0
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 4.8e-25 119.8 224 39.7
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.4e-24 118.2 188 44.7
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.1e-24 117.1 177 40.1
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-23 115.2 166 44.6
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.6e-23 114.8 173 46.8
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 2.0e-23 114.4 185 45.9
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.2e-22 110.9 331 32.6
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.1e-21 108.6 160 43.1
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.1e-20 104.4 150 43.3
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 4.7e-20 103.2 446 29.1
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.8e-19 101.3 177 41.2
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.5e-18 98.2 132 48.5
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 3.4e-18 97.1 127 48.0
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 4.4e-18 96.7 135 46.7
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 4.4e-18 96.7 154 44.8
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 3.7e-17 93.6 181 39.8
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.4e-16 91.7 273 31.9
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.1e-16 90.5 138 40.6
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.2e-15 88.6 120 46.7
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 7.8e-15 85.9 111 46.8
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 2.3e-14 84.3 111 46.8
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 5.0e-14 83.2 71 60.6
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 8.6e-14 82.4 94 51.1
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-11 75.5 58 58.6
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.8e-11 74.7 179 34.1
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 3.7e-09 67.0 118 44.9
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 3.7e-09 67.0 125 39.2
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 4.9e-09 66.6 43 69.8
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 5.4e-08 63.2 151 35.8
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-06 58.5 150 30.7
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.0e-06 56.6 190 27.4
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 8.6e-06 55.8 50 54.0


User provided reference genes

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