Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.3e-290 1002.3 503 100.0
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 3.8e-11 73.9 245 25.7
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 3.8e-11 73.9 255 25.9
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 6.5e-11 73.2 245 25.7
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.5e-10 72.0 265 24.9
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.5e-10 71.2 259 26.3
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 7.2e-10 69.7 263 27.4
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 7.2e-10 69.7 259 25.9
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 7.2e-10 69.7 259 25.9
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.2e-09 68.9 190 27.9
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.2e-09 68.9 246 26.0
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.6e-09 67.4 199 28.1
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 6.1e-09 66.6 199 28.1
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 6.1e-09 66.6 233 26.2
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 6.1e-09 66.6 259 25.1
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 6.1e-09 66.6 250 24.4
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 8.0e-09 66.2 231 25.5
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 8.0e-09 66.2 223 26.5
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 8.0e-09 66.2 200 28.0
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.0e-08 65.9 264 24.6
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.8e-08 65.1 267 26.6
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 2.3e-08 64.7 199 27.6
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 3.0e-08 64.3 267 25.5
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 3.0e-08 64.3 220 25.5
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 3.0e-08 64.3 263 27.4
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 4.0e-08 63.9 246 25.6
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 4.0e-08 63.9 220 27.3
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 5.2e-08 63.5 239 25.1
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 5.2e-08 63.5 255 24.7
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 5.2e-08 63.5 256 25.8
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 6.8e-08 63.2 240 27.1
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 6.8e-08 63.2 260 24.6
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 6.8e-08 63.2 246 26.8
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 8.8e-08 62.8 259 26.6
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 8.8e-08 62.8 231 25.5
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 8.8e-08 62.8 244 26.6
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 8.8e-08 62.8 199 27.1
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 8.8e-08 62.8 220 24.1
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 8.8e-08 62.8 283 24.4
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 8.8e-08 62.8 245 25.3
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.2e-07 62.4 233 25.8
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.5e-07 62.0 256 25.0
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 2.0e-07 61.6 258 24.0
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.0e-07 61.6 268 25.0
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.0e-07 61.6 244 27.5
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 2.0e-07 61.6 265 25.3
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 2.6e-07 61.2 243 24.7
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 2.6e-07 61.2 261 24.9
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 3.4e-07 60.8 266 26.3
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 4.4e-07 60.5 235 25.1
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 4.4e-07 60.5 244 25.8
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 4.4e-07 60.5 269 24.5
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 5.7e-07 60.1 246 25.6
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 5.7e-07 60.1 233 26.2
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 7.5e-07 59.7 205 26.8
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 7.5e-07 59.7 245 25.3
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 7.5e-07 59.7 199 26.1
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 9.8e-07 59.3 220 25.5
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.3e-06 58.9 271 24.4
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.3e-06 58.9 282 22.7
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.7e-06 58.5 222 25.2
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.7e-06 58.5 238 25.6
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.7e-06 58.5 305 22.3
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.7e-06 58.5 241 27.0
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 2.2e-06 58.2 224 26.3
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.8e-06 57.8 245 24.9
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.8e-06 57.8 221 25.3
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.8e-06 57.8 229 23.1
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.8e-06 57.8 257 25.3
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.8e-06 57.8 257 25.3
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 3.7e-06 57.4 266 24.1
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 3.7e-06 57.4 282 22.3
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 3.7e-06 57.4 243 26.3
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 4.8e-06 57.0 209 25.8
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.8e-06 57.0 214 23.4
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 6.3e-06 56.6 311 22.8


User provided reference genes

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