Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 0.0e+00 1935.6 955 100.0
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 7.8e-114 416.0 704 37.2
Cfa024390 Carpinus fangiana HOM05D003659 ORTHO05D125208 2.0e-109 401.4 655 36.9
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 4.1e-14 84.7 195 32.8
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.6e-13 82.8 195 33.3
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.6e-13 82.8 200 33.0
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 2.0e-13 82.4 196 32.7
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 2.0e-13 82.4 195 32.3
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 2.7e-13 82.0 194 32.0
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 3.5e-13 81.6 193 32.1
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 4.6e-13 81.3 247 27.5
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 7.8e-13 80.5 266 30.8
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 1.0e-12 80.1 195 31.8
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 1.3e-12 79.7 203 31.0
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 1.3e-12 79.7 206 30.1
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.3e-12 79.0 195 30.8
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 2.3e-12 79.0 207 33.8
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 3.0e-12 78.6 194 32.0
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 3.0e-12 78.6 194 32.0
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 5.0e-12 77.8 223 29.6
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 6.6e-12 77.4 194 31.4
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 6.6e-12 77.4 207 31.4
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 8.6e-12 77.0 208 30.3
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 8.6e-12 77.0 194 33.5
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 8.6e-12 77.0 194 32.0
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.1e-11 76.6 195 31.8
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 1.1e-11 76.6 198 33.8
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 1.5e-11 76.3 185 33.0
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 1.5e-11 76.3 193 30.6
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 1.9e-11 75.9 195 32.3
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 1.9e-11 75.9 218 29.4
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.9e-11 75.9 194 33.0
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 1.9e-11 75.9 195 32.8
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 1.9e-11 75.9 214 29.4
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 2.5e-11 75.5 208 30.3
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 2.5e-11 75.5 206 29.1
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 2.5e-11 75.5 234 28.6
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 3.3e-11 75.1 195 30.8
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 3.3e-11 75.1 195 31.8
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 3.3e-11 75.1 194 29.9
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 3.3e-11 75.1 195 30.8
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 3.3e-11 75.1 195 28.7
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 4.3e-11 74.7 198 31.8
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 4.3e-11 74.7 198 31.8
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 4.3e-11 74.7 235 29.4
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 4.3e-11 74.7 195 31.8
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 4.3e-11 74.7 196 32.1
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 4.3e-11 74.7 195 31.3
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 5.6e-11 74.3 195 30.8
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 5.6e-11 74.3 195 30.3
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 5.6e-11 74.3 234 29.9
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 7.3e-11 73.9 193 30.6
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 7.3e-11 73.9 194 30.9
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 7.3e-11 73.9 195 32.3
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 7.3e-11 73.9 194 32.0
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 7.3e-11 73.9 166 33.7
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 9.5e-11 73.6 195 30.3
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 9.5e-11 73.6 195 29.2
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 9.5e-11 73.6 195 31.8
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 9.5e-11 73.6 195 29.2
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 9.5e-11 73.6 195 30.3
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 9.5e-11 73.6 195 30.3
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 9.5e-11 73.6 219 31.5
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.2e-10 73.2 194 32.0
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.2e-10 73.2 194 32.0
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 1.2e-10 73.2 195 31.3
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 1.2e-10 73.2 195 30.8
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 1.2e-10 73.2 208 30.8
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 1.2e-10 73.2 198 29.8
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 1.2e-10 73.2 234 28.6
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 1.2e-10 73.2 219 31.1
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 1.6e-10 72.8 204 29.9
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 1.6e-10 72.8 194 31.4
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.6e-10 72.8 194 30.4
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.6e-10 72.8 194 30.4
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 1.6e-10 72.8 195 32.3
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 1.6e-10 72.8 195 31.8
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 2.1e-10 72.4 195 29.7
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 2.1e-10 72.4 198 31.3
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 2.1e-10 72.4 211 28.9
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 2.1e-10 72.4 196 29.6
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 2.1e-10 72.4 208 31.2
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.8e-10 72.0 195 29.7
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 2.8e-10 72.0 199 30.7
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.6e-10 71.6 194 31.4
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 3.6e-10 71.6 195 30.3
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 3.6e-10 71.6 214 28.5
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 3.6e-10 71.6 234 28.2
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 3.6e-10 71.6 174 31.6
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 4.7e-10 71.2 194 31.4
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 4.7e-10 71.2 206 29.6
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 4.7e-10 71.2 235 28.9
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 4.7e-10 71.2 194 32.0
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 4.7e-10 71.2 176 33.0
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 4.7e-10 71.2 208 29.8
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 6.2e-10 70.9 195 29.2
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 6.2e-10 70.9 195 29.2
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 6.2e-10 70.9 194 30.9
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 6.2e-10 70.9 194 28.9
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 6.2e-10 70.9 195 30.3
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 8.0e-10 70.5 195 30.8
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 8.0e-10 70.5 195 30.8
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 8.0e-10 70.5 195 30.8
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 8.0e-10 70.5 195 30.8
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 8.0e-10 70.5 195 30.8
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 8.0e-10 70.5 194 30.9
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 8.0e-10 70.5 194 30.9
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 8.0e-10 70.5 194 30.9
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 8.0e-10 70.5 195 30.8
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 8.0e-10 70.5 186 31.7
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 1.1e-09 70.1 195 31.3
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 1.1e-09 70.1 200 30.0
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 1.1e-09 70.1 195 28.7
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 1.1e-09 70.1 195 30.3
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.4e-09 69.7 194 30.4
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 1.4e-09 69.7 182 32.4
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 1.4e-09 69.7 234 28.2
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 1.4e-09 69.7 193 30.6
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 1.4e-09 69.7 198 30.8
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 1.8e-09 69.3 176 30.1
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 1.8e-09 69.3 195 29.7
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 3.1e-09 68.6 194 28.4
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 3.1e-09 68.6 193 29.5
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 3.1e-09 68.6 193 29.5
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 3.1e-09 68.6 197 32.5
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 3.1e-09 68.6 200 29.0
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 3.1e-09 68.6 200 29.5
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 3.1e-09 68.6 195 30.3
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 4.0e-09 68.2 234 26.1
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 5.2e-09 67.8 195 30.8
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 6.8e-09 67.4 194 30.9
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 8.9e-09 67.0 194 30.9
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 8.9e-09 67.0 182 31.9
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.2e-08 66.6 193 29.0
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 4.4e-08 64.7 193 30.1
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 3.7e-07 61.6 176 29.5
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 3.7e-07 61.6 218 26.1
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 1.4e-06 59.7 181 30.4
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 3.2e-06 58.5 124 32.3


User provided reference genes

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