Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024299 Carpinus fangiana HOM05D003297 ORTHO05D124500 4.6e-181 637.9 351 100.0
Pp3c2_20640 Physcomitrium patens HOM05D003297 ORTHO05D004027 2.0e-22 110.9 206 35.9
AagrBONN_evm.TU.Sc2ySwM_368.1649 Anthoceros agrestis HOM05D003297 ORTHO05D004027 1.7e-21 107.8 205 32.7
arahy.Tifrunner.gnm1.ann1.5QR84K Arachis hypogaea HOM05D003297 ORTHO05D004027 1.4e-20 104.8 223 32.3
MD17G1015400 Malus domestica HOM05D003297 ORTHO05D004027 1.8e-20 104.4 193 34.7
Nn3g16636 Nelumbo nucifera HOM05D003297 ORTHO05D004027 4.1e-20 103.2 195 34.4
arahy.Tifrunner.gnm1.ann1.G51SBL Arachis hypogaea HOM05D003297 ORTHO05D004027 5.4e-20 102.8 223 31.8
Manes.17G106000 Manihot esculenta HOM05D003297 ORTHO05D004027 7.0e-20 102.4 243 31.3
Os01g0184800 Oryza sativa ssp. japonica HOM05D003297 ORTHO05D004027 9.2e-20 102.1 190 32.6
MD09G1015300 Malus domestica HOM05D003297 ORTHO05D004027 1.6e-19 101.3 193 34.2
Prupe.3G302500 Prunus persica HOM05D003297 ORTHO05D004027 1.6e-19 101.3 217 33.2
Hund18929 Selenicereus undatus HOM05D003297 ORTHO05D004027 1.6e-19 101.3 223 32.3
arahy.Tifrunner.gnm1.ann1.IZLP0D Arachis hypogaea HOM05D003297 ORTHO05D004027 2.7e-19 100.5 223 30.0
CDE04G3082 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 2.7e-19 100.5 192 32.3
Hund04990 Selenicereus undatus HOM05D003297 ORTHO05D004027 2.7e-19 100.5 223 32.3
HPP92_005181 Vanilla planifolia HOM05D003297 ORTHO05D004027 2.7e-19 100.5 205 30.7
Eucgr.J02308 Eucalyptus grandis HOM05D003297 ORTHO05D004027 3.5e-19 100.1 220 31.8
Gohir.A05G340500 Gossypium hirsutum HOM05D003297 ORTHO05D004027 3.5e-19 100.1 214 32.7
Gorai.006G040100 Gossypium raimondii HOM05D003297 ORTHO05D004027 3.5e-19 100.1 219 32.4
Lj1g0013881 Lotus japonicus HOM05D003297 ORTHO05D004027 3.5e-19 100.1 223 32.7
Mapoly0059s0038 Marchantia polymorpha HOM05D003297 ORTHO05D004027 3.5e-19 100.1 205 31.7
CSS0009984 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 4.6e-19 99.8 227 34.4
Lj7A608T45 Lonicera japonica HOM05D003297 ORTHO05D004027 4.6e-19 99.8 199 32.2
TWI36G1507 Tripterygium wilfordii HOM05D003297 ORTHO05D004027 4.6e-19 99.8 245 31.0
CiPaw.03G052300 Carya illinoinensis HOM05D003297 ORTHO05D004027 7.8e-19 99.0 217 32.3
Gorai.012G088800 Gossypium raimondii HOM05D003297 ORTHO05D004027 1.0e-18 98.6 214 32.2
Duzib264G0931 Durio zibethinus HOM05D003297 ORTHO05D004027 1.3e-18 98.2 228 30.7
THA.LOC104822413 Tarenaya hassleriana HOM05D003297 ORTHO05D004027 1.3e-18 98.2 200 33.0
Actinidia38211 Actinidia chinensis HOM05D003297 ORTHO05D004027 1.7e-18 97.8 220 31.4
CARHR199100 Cardamine hirsuta HOM05D003297 ORTHO05D004027 2.3e-18 97.4 192 33.9
Gohir.D09G035200 Gossypium hirsutum HOM05D003297 ORTHO05D004027 2.3e-18 97.4 219 32.0
Prupe.6G027300 Prunus persica HOM05D003297 ORTHO05D004027 2.9e-18 97.1 221 32.6
CSS0027121 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.9e-18 96.7 221 33.0
Ciclev10016373m.g Citrus clementina HOM05D003297 ORTHO05D004027 3.9e-18 96.7 245 28.6
Gohir.D04G078900 Gossypium hirsutum HOM05D003297 ORTHO05D004027 3.9e-18 96.7 214 32.2
Hma1.2p1_0172F.1_g076190 Hydrangea macrophylla HOM05D003297 ORTHO05D004027 3.9e-18 96.7 247 29.6
Nitab4.5_0003600g0020 Nicotiana tabacum HOM05D003297 ORTHO05D004027 3.9e-18 96.7 222 30.6
Phvul.004G055600 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 3.9e-18 96.7 218 31.2
QL02p072446 Quercus lobata HOM05D003297 ORTHO05D004027 3.9e-18 96.7 245 30.2
arahy.Tifrunner.gnm1.ann1.PXFG7S Arachis hypogaea HOM05D003297 ORTHO05D004027 5.0e-18 96.3 184 31.5
CSS0005089 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 5.0e-18 96.3 227 33.5
HanXRQChr17g0550191 Helianthus annuus HOM05D003297 ORTHO05D004027 5.0e-18 96.3 223 30.5
Dinv25678 Davidia involucrata HOM05D003297 ORTHO05D004027 8.6e-18 95.5 245 29.8
PGR083G1628 Punica granatum HOM05D003297 ORTHO05D004027 8.6e-18 95.5 221 31.2
RcHm_v2.0_Chr3g0477231 Rosa chinensis HOM05D003297 ORTHO05D004027 8.6e-18 95.5 196 33.2
Lsat_1_v5_gn_0_14320 Lactuca sativa HOM05D003297 ORTHO05D004027 1.1e-17 95.1 249 28.9
Nn1g00668 Nelumbo nucifera HOM05D003297 ORTHO05D004027 1.1e-17 95.1 213 32.9
Sabra16G0215200 Salix brachista HOM05D003297 ORTHO05D004027 1.1e-17 95.1 225 31.1
TAR371G0644 Trochodendron aralioides HOM05D003297 ORTHO05D004027 1.1e-17 95.1 192 31.2
SMO147G0291 Selaginella moellendorffii HOM05D003297 ORTHO05D004027 1.5e-17 94.7 241 29.5
Cpa.g.sc130.8 Carica papaya HOM05D003297 ORTHO05D004027 1.9e-17 94.4 217 32.3
Cfa007254 Carpinus fangiana HOM05D003297 ORTHO05D004027 1.9e-17 94.4 246 29.3
PSO541G1060 Papaver somniferum HOM05D003297 ORTHO05D004027 1.9e-17 94.4 220 30.0
SEGI_15348 Sequoiadendron giganteum HOM05D003297 ORTHO05D004027 1.9e-17 94.4 204 29.9
CsaV3_3G044040 Cucumis sativus L. HOM05D003297 ORTHO05D004027 2.5e-17 94.0 221 30.8
Haze_14833 Corylus avellana HOM05D003297 ORTHO05D004027 3.3e-17 93.6 246 29.3
Lsat_1_v5_gn_2_94421 Lactuca sativa HOM05D003297 ORTHO05D004027 3.3e-17 93.6 197 31.0
Rhsim10G0008800 Rhododendron simsii HOM05D003297 ORTHO05D004027 3.3e-17 93.6 246 30.9
Thecc.04G030000 Theobroma cacao HOM05D003297 ORTHO05D004027 3.3e-17 93.6 239 29.7
BcaB01g06337 Brassica carinata HOM05D003297 ORTHO05D004027 4.3e-17 93.2 222 31.1
Cc05_g01780 Coffea canephora HOM05D003297 ORTHO05D004027 5.6e-17 92.8 219 31.5
Cc05_g01790 Coffea canephora HOM05D003297 ORTHO05D004027 5.6e-17 92.8 219 31.5
Lj4g0023257 Lotus japonicus HOM05D003297 ORTHO05D004027 5.6e-17 92.8 223 31.8
RcHm_v2.0_Chr3g0477241 Rosa chinensis HOM05D003297 ORTHO05D004027 5.6e-17 92.8 246 30.1
AUR62001824 Chenopodium quinoa HOM05D003297 ORTHO05D004027 7.3e-17 92.4 244 28.3
DCAR_021763 Daucus carota HOM05D003297 ORTHO05D004027 7.3e-17 92.4 224 29.0
MCO09G068 Micromonas commoda HOM05D003297 ORTHO05D004027 7.3e-17 92.4 208 32.7
Aqoxy3G01473 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 9.5e-17 92.0 225 30.7
BcaB01g05299 Brassica carinata HOM05D003297 ORTHO05D004027 9.5e-17 92.0 222 30.2
PSO675G2052 Papaver somniferum HOM05D003297 ORTHO05D004027 9.5e-17 92.0 220 29.5
Psat1g161760 Pisum sativum HOM05D003297 ORTHO05D004027 9.5e-17 92.0 223 29.6
Aa31LG11G15030 Aethionema arabicum HOM05D003297 ORTHO05D004027 1.2e-16 91.7 222 31.1
ClCG08G000860 Citrullus lanatus HOM05D003297 ORTHO05D004027 1.6e-16 91.3 221 30.8
Oeu058767.1 Olea europaea HOM05D003297 ORTHO05D004027 1.6e-16 91.3 198 31.3
Phvul.010G007000 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 1.6e-16 91.3 197 30.5
Rhsim06G0126200 Rhododendron simsii HOM05D003297 ORTHO05D004027 1.6e-16 91.3 247 30.4
Sc03g0006810 Simmondsia chinensis HOM05D003297 ORTHO05D004027 1.6e-16 91.3 223 30.9
Solyc10g078830.2 Solanum lycopersicum HOM05D003297 ORTHO05D004027 1.6e-16 91.3 226 31.4
Sopen10g029470 Solanum pennellii HOM05D003297 ORTHO05D004027 1.6e-16 91.3 226 31.4
PGSC0003DMG400011416 Solanum tuberosum HOM05D003297 ORTHO05D004027 1.6e-16 91.3 226 31.4
MSTRG.3093 Avicennia marina HOM05D003297 ORTHO05D004027 2.1e-16 90.9 197 31.5
C03p07500 Brassica napus HOM05D003297 ORTHO05D004027 2.1e-16 90.9 222 30.2
Nitab4.5_0004643g0030 Nicotiana tabacum HOM05D003297 ORTHO05D004027 2.1e-16 90.9 226 31.0
Sed0027775 Sechium edule HOM05D003297 ORTHO05D004027 2.1e-16 90.9 226 29.2
TPR.G5775 Trifolium pratense HOM05D003297 ORTHO05D004027 2.1e-16 90.9 223 29.1
A03p06500 Brassica napus HOM05D003297 ORTHO05D004027 2.8e-16 90.5 222 30.6
GSVIVG01001822001 Vitis vinifera HOM05D003297 ORTHO05D004027 2.8e-16 90.5 245 28.6
BraA03t09982Z Brassica rapa HOM05D003297 ORTHO05D004027 3.6e-16 90.1 222 30.6
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.6e-16 90.1 261 28.0
Medtr2g034610 Medicago truncatula HOM05D003297 ORTHO05D004027 3.6e-16 90.1 223 29.1
Glyma.12G242000 Glycine max HOM05D003297 ORTHO05D004027 4.7e-16 89.7 221 30.3
Lalb_Chr06g0174311 Lupinus albus HOM05D003297 ORTHO05D004027 4.7e-16 89.7 227 30.8
BolC3t13251H Brassica oleracea HOM05D003297 ORTHO05D004027 6.2e-16 89.4 222 30.2
PSO478G3807 Papaver somniferum HOM05D003297 ORTHO05D004027 6.2e-16 89.4 220 29.5
ATR1136G208 Amborella trichopoda HOM05D003297 ORTHO05D004027 8.0e-16 89.0 242 27.3
AT5G14240 Arabidopsis thaliana HOM05D003297 ORTHO05D004027 8.0e-16 89.0 222 31.1
CANSAT64G0772 Cannabis sativa HOM05D003297 ORTHO05D004027 8.0e-16 89.0 247 30.0
AL6G24920 Arabidopsis lyrata HOM05D003297 ORTHO05D004027 1.0e-15 88.6 222 31.1
ECA246G0154 Erigeron canadensis HOM05D003297 ORTHO05D004027 1.0e-15 88.6 224 30.8
BcaC04g19050 Brassica carinata HOM05D003297 ORTHO05D004027 1.4e-15 88.2 222 30.6
Glyma.19G075600 Glycine max HOM05D003297 ORTHO05D004027 1.4e-15 88.2 219 30.6
C09p62920 Brassica napus HOM05D003297 ORTHO05D004027 1.8e-15 87.8 222 30.6
BolC9t59129H Brassica oleracea HOM05D003297 ORTHO05D004027 1.8e-15 87.8 222 30.6
COL.COLO4_08765 Corchorus olitorius HOM05D003297 ORTHO05D004027 1.8e-15 87.8 239 28.9
Migut.H00013 Erythranthe guttata HOM05D003297 ORTHO05D004027 1.8e-15 87.8 198 29.3
vmacro05937 Vaccinium macrocarpon HOM05D003297 ORTHO05D004027 1.8e-15 87.8 213 29.6
Ah.16g107000 Amaranthus hybridus HOM05D003297 ORTHO05D004027 2.3e-15 87.4 276 25.4
Migut.D01746 Erythranthe guttata HOM05D003297 ORTHO05D004027 2.3e-15 87.4 204 29.4
Peaxi162Scf00304g00127 Petunia axillaris HOM05D003297 ORTHO05D004027 2.3e-15 87.4 225 30.2
Atru.chr6.2513 Acer truncatum HOM05D003297 ORTHO05D004027 4.0e-15 86.7 246 28.0
MBI15_g24202_MAGBIO Magnolia biondii HOM05D003297 ORTHO05D004027 5.2e-15 86.3 257 25.7
MELO3C022190.2 Cucumis melo HOM05D003297 ORTHO05D004027 6.8e-15 85.9 239 29.7
Sp6g29790 Schrenkiella parvula HOM05D003297 ORTHO05D004027 6.8e-15 85.9 222 30.2
A10p24230 Brassica napus HOM05D003297 ORTHO05D004027 8.9e-15 85.5 222 30.2
BraA10t44488Z Brassica rapa HOM05D003297 ORTHO05D004027 8.9e-15 85.5 222 30.2
Carub.0006s1244 Capsella rubella HOM05D003297 ORTHO05D004027 8.9e-15 85.5 222 30.2
HanXRQChr15g0474721 Helianthus annuus HOM05D003297 ORTHO05D004027 8.9e-15 85.5 246 28.0
BcaB08g36969 Brassica carinata HOM05D003297 ORTHO05D004027 1.2e-14 85.1 222 30.6
unitig_0.g1941 Utricularia gibba HOM05D003297 ORTHO05D004027 9.8e-14 82.0 183 30.6
Thhalv10014458m.g Eutrema salsugineum HOM05D003297 ORTHO05D004027 3.7e-13 80.1 222 29.7
PSO541G1735 Papaver somniferum HOM05D003297 ORTHO05D004027 6.4e-13 79.3 171 29.8
PRCOL_00004862 Prasinoderma coloniale HOM05D003297 ORTHO05D004027 2.4e-12 77.4 245 29.8
CSS0031371 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.2e-12 77.0 225 28.9
CARHR103230 Cardamine hirsuta HOM05D003297 ORTHO05D004027 1.2e-11 75.1 145 33.8
HanXRQChr17g0550181 Helianthus annuus HOM05D003297 ORTHO05D004027 7.8e-11 72.4 173 30.1
Cre06.g291900 Chlamydomonas reinhardtii HOM05D003297 ORTHO05D004027 1.0e-10 72.0 215 28.8
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 1.3e-10 71.6 197 26.4
Gohir.A09G034300 Gossypium hirsutum HOM05D003297 ORTHO05D004027 5.0e-10 69.7 219 28.8
Peaxi162Scf00003g04521 Petunia axillaris HOM05D003297 ORTHO05D004027 1.1e-09 68.6 246 28.0
SGA_v2.0_scaffold18G08223 Striga asiatica HOM05D003297 ORTHO05D004027 1.1e-09 68.6 190 28.4
Nitab4.5_0000105g0150 Nicotiana tabacum HOM05D003297 ORTHO05D004027 1.5e-09 68.2 219 28.3
TAR376G0821 Trochodendron aralioides HOM05D003297 ORTHO05D004027 2.5e-09 67.4 116 33.6
FAN14G3337 Fragaria x ananassa HOM05D003297 ORTHO05D004027 3.3e-09 67.0 173 27.7
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 9.5e-09 65.5 172 27.3
FAN05G2899 Fragaria x ananassa HOM05D003297 ORTHO05D004027 9.5e-09 65.5 172 27.3
FvH4_6g20890 Fragaria vesca HOM05D003297 ORTHO05D004027 2.1e-08 64.3 172 26.7
CAN.G1161.37 Capsicum annuum HOM05D003297 ORTHO05D004027 4.7e-08 63.2 150 30.0
Actinidia30893 Actinidia chinensis HOM05D003297 ORTHO05D004027 2.3e-07 60.8 118 31.4
CSS0020533 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.1e-07 60.5 160 31.2
Lsat_1_v5_gn_1_126600 Lactuca sativa HOM05D003297 ORTHO05D004027 3.1e-07 60.5 135 26.7
Zm00001eb121870 Zea mays HOM05D003297 ORTHO05D004027 3.1e-07 60.5 116 30.2
Peaxi162Scf00480g00212 Petunia axillaris HOM05D003297 ORTHO05D004027 4.0e-07 60.1 144 28.5
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 1.2e-06 58.5 116 30.2
Oeu050424.1 Olea europaea HOM05D003297 ORTHO05D004027 2.0e-06 57.8 109 33.9
Zm00001eb269870 Zea mays HOM05D003297 ORTHO05D004027 2.0e-06 57.8 116 30.2
Potri.017G066200 Populus trichocarpa HOM05D003297 ORTHO05D004027 2.6e-06 57.4 134 26.1
HanXRQChr17g0534591 Helianthus annuus HOM05D003297 ORTHO05D004027 4.4e-06 56.6 150 28.0
PSO017G7282 Papaver somniferum HOM05D003297 ORTHO05D004027 5.8e-06 56.2 141 29.1


User provided reference genes

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