Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024297 Carpinus fangiana HOM05D004492 ORTHO05D005602 0.0e+00 1824.7 997 100.0
Mapoly0101s0047 Marchantia polymorpha HOM05D004492 ORTHO05D005602 2.0e-19 102.4 299 26.1
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 4.4e-19 101.3 291 28.5
MELO3C003048.2 Cucumis melo HOM05D004492 ORTHO05D005602 5.8e-19 100.9 297 29.0
Lsat_1_v5_gn_6_109160 Lactuca sativa HOM05D004492 ORTHO05D005602 5.8e-19 100.9 292 26.4
RcHm_v2.0_Chr6g0294891 Rosa chinensis HOM05D004492 ORTHO05D005602 9.9e-19 100.1 514 21.0
HanXRQChr05g0149221 Helianthus annuus HOM05D004492 ORTHO05D005602 1.7e-18 99.4 292 25.3
Glyma.04G252800 Glycine max HOM05D004492 ORTHO05D005602 2.2e-18 99.0 391 25.1
ECA246G3183 Erigeron canadensis HOM05D004492 ORTHO05D005602 4.9e-18 97.8 517 23.0
Lj1g0007587 Lotus japonicus HOM05D004492 ORTHO05D005602 6.4e-18 97.4 303 28.1
Actinidia29442 Actinidia chinensis HOM05D004492 ORTHO05D005602 8.4e-18 97.1 284 26.1
MD15G1356600 Malus domestica HOM05D004492 ORTHO05D005602 1.1e-17 96.7 298 24.5
Cpa.g.sc36.10 Carica papaya HOM05D004492 ORTHO05D005602 1.9e-17 95.9 279 27.2
Pp3c19_7630 Physcomitrium patens HOM05D004492 ORTHO05D005602 1.9e-17 95.9 318 25.8
Potri.005G173100 Populus trichocarpa HOM05D004492 ORTHO05D005602 1.9e-17 95.9 301 25.9
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 2.4e-17 95.5 301 26.6
TAR625G1407 Trochodendron aralioides HOM05D004492 ORTHO05D005602 3.2e-17 95.1 302 26.5
Dinv27371 Davidia involucrata HOM05D004492 ORTHO05D005602 5.4e-17 94.4 276 26.4
Sed0009263 Sechium edule HOM05D004492 ORTHO05D005602 5.4e-17 94.4 285 27.0
Atru.chr13.1338 Acer truncatum HOM05D004492 ORTHO05D005602 7.1e-17 94.0 323 25.4
Atru.chr13.1381 Acer truncatum HOM05D004492 ORTHO05D005602 7.1e-17 94.0 323 25.4
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 1.2e-16 93.2 306 24.5
Sopen06g020530 Solanum pennellii HOM05D004492 ORTHO05D005602 1.2e-16 93.2 304 25.3
Solyc06g060390.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 1.6e-16 92.8 309 27.8
Ah.05g172340 Amaranthus hybridus HOM05D004492 ORTHO05D005602 2.7e-16 92.0 293 25.6
Phvul.009G121500 Phaseolus vulgaris HOM05D004492 ORTHO05D005602 3.5e-16 91.7 542 23.1
Prupe.1G503800 Prunus persica HOM05D004492 ORTHO05D005602 3.5e-16 91.7 301 24.9
SMO116G0295 Selaginella moellendorffii HOM05D004492 ORTHO05D005602 4.6e-16 91.3 289 26.3
PSO170G3797 Papaver somniferum HOM05D004492 ORTHO05D005602 6.0e-16 90.9 307 26.7
Sc23g0000850 Simmondsia chinensis HOM05D004492 ORTHO05D005602 6.0e-16 90.9 297 25.6
CAN.G1396.8 Capsicum annuum HOM05D004492 ORTHO05D005602 7.8e-16 90.5 321 24.9
DCAR_002659 Daucus carota HOM05D004492 ORTHO05D005602 7.8e-16 90.5 292 24.3
Migut.C01177 Erythranthe guttata HOM05D004492 ORTHO05D005602 1.0e-15 90.1 280 24.6
Medtr3g073000 Medicago truncatula HOM05D004492 ORTHO05D005602 1.0e-15 90.1 317 24.9
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 1.0e-15 90.1 287 25.8
ATR0684G004 Amborella trichopoda HOM05D004492 ORTHO05D005602 1.3e-15 89.7 277 24.9
MSTRG.25402 Avicennia marina HOM05D004492 ORTHO05D005602 1.3e-15 89.7 296 25.3
CANSAT11G0049 Cannabis sativa HOM05D004492 ORTHO05D005602 1.3e-15 89.7 324 25.3
Migut.C01175 Erythranthe guttata HOM05D004492 ORTHO05D005602 1.3e-15 89.7 304 25.0
ClCG03G009360 Citrullus lanatus HOM05D004492 ORTHO05D005602 1.7e-15 89.4 314 26.4
PGSC0003DMG400017559 Solanum tuberosum HOM05D004492 ORTHO05D005602 1.7e-15 89.4 304 25.0
Sabra05G0130600 Salix brachista HOM05D004492 ORTHO05D005602 2.3e-15 89.0 296 25.0
unitig_46.g18495 Utricularia gibba HOM05D004492 ORTHO05D005602 2.3e-15 89.0 277 26.0
Duzib093G1652 Durio zibethinus HOM05D004492 ORTHO05D005602 3.0e-15 88.6 301 25.6
TWI12G1231 Tripterygium wilfordii HOM05D004492 ORTHO05D005602 3.9e-15 88.2 276 24.6
TPR.G22341 Trifolium pratense HOM05D004492 ORTHO05D005602 5.1e-15 87.8 322 26.1
Nitab4.5_0000633g0160 Nicotiana tabacum HOM05D004492 ORTHO05D005602 6.6e-15 87.4 307 25.1
FvH4_2g26280 Fragaria vesca HOM05D004492 ORTHO05D005602 1.1e-14 86.7 520 21.0
PRCOL_00002940 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 1.1e-14 86.7 314 28.3
SalBow7G1607 Salvia bowleyana HOM05D004492 ORTHO05D005602 1.5e-14 86.3 287 26.1
BcaB03g16570 Brassica carinata HOM05D004492 ORTHO05D005602 1.9e-14 85.9 273 23.8
CiPaw.06G026300 Carya illinoinensis HOM05D004492 ORTHO05D005602 1.9e-14 85.9 301 24.6
Ciclev10001105m.g Citrus clementina HOM05D004492 ORTHO05D005602 1.9e-14 85.9 248 26.2
Oeu047923.1 Olea europaea HOM05D004492 ORTHO05D005602 1.9e-14 85.9 309 24.3
Psat5g133640 Pisum sativum HOM05D004492 ORTHO05D005602 1.9e-14 85.9 280 26.1
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 1.9e-14 85.9 314 23.9
COL.COLO4_38233 Corchorus olitorius HOM05D004492 ORTHO05D005602 3.3e-14 85.1 493 20.1
Manes.18G073743 Manihot esculenta HOM05D004492 ORTHO05D005602 3.3e-14 85.1 300 23.7
Peaxi162Scf00051g00731 Petunia axillaris HOM05D004492 ORTHO05D005602 3.3e-14 85.1 293 25.3
EL10Ac1g00021 Beta vulgaris HOM05D004492 ORTHO05D005602 4.3e-14 84.7 290 25.9
AUR62004708 Chenopodium quinoa HOM05D004492 ORTHO05D005602 4.3e-14 84.7 293 23.9
Lalb_Chr08g0241631 Lupinus albus HOM05D004492 ORTHO05D005602 4.3e-14 84.7 296 23.6
Nitab4.5_0004882g0030 Nicotiana tabacum HOM05D004492 ORTHO05D005602 5.6e-14 84.3 315 24.4
RcHm_v2.0_Chr6g0294881 Rosa chinensis HOM05D004492 ORTHO05D005602 5.6e-14 84.3 300 26.0
HPP92_009359 Vanilla planifolia HOM05D004492 ORTHO05D005602 5.6e-14 84.3 346 25.4
GSVIVG01008928001 Vitis vinifera HOM05D004492 ORTHO05D005602 5.6e-14 84.3 301 23.9
Gohir.A02G074300 Gossypium hirsutum HOM05D004492 ORTHO05D005602 9.6e-14 83.6 297 24.9
Aqoxy5G02431 Aquilegia oxysepala HOM05D004492 ORTHO05D005602 1.3e-13 83.2 235 28.1
Gohir.D02G081500 Gossypium hirsutum HOM05D004492 ORTHO05D005602 1.3e-13 83.2 280 25.4
FAN24G0496 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.6e-13 82.8 301 23.3
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 1.6e-13 82.8 313 22.7
SalBow7G0677 Salvia bowleyana HOM05D004492 ORTHO05D005602 2.1e-13 82.4 292 25.7
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 8.1e-13 80.5 281 24.2
VMungo1309G2182 Vigna mungo HOM05D004492 ORTHO05D005602 8.1e-13 80.5 219 26.0
Gorai.005G091200 Gossypium raimondii HOM05D004492 ORTHO05D005602 1.4e-12 79.7 308 24.7
THA.LOC104813139 Tarenaya hassleriana HOM05D004492 ORTHO05D005602 2.4e-12 79.0 284 24.6
AUR62030552 Chenopodium quinoa HOM05D004492 ORTHO05D005602 3.1e-12 78.6 308 24.7
COL.COLO4_38230 Corchorus olitorius HOM05D004492 ORTHO05D005602 1.2e-11 76.6 233 24.5
arahy.Tifrunner.gnm1.ann1.WF7TJ5 Arachis hypogaea HOM05D004492 ORTHO05D005602 1.5e-11 76.3 311 22.8
FAN15G1155 Fragaria x ananassa HOM05D004492 ORTHO05D005602 1.5e-11 76.3 328 25.3
CBR_g16883 Chara braunii HOM05D004492 ORTHO05D001303 2.0e-11 75.9 305 24.9
CDE11G0913 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 3.4e-11 75.1 111 34.2
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 5.8e-11 74.3 287 24.4
Lj7C323T6 Lonicera japonica HOM05D004492 ORTHO05D005602 2.2e-10 72.4 119 30.3
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 2.2e-10 72.4 287 24.0
CSS0028158 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 4.9e-10 71.2 119 30.3
CSS0038302 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 4.9e-10 71.2 119 30.3
Gohir.A09G129800 Gossypium hirsutum HOM05D007640 ORTHO05D009514 4.9e-10 71.2 282 27.3
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 4.9e-10 71.2 288 24.7
Migut.C01176 Erythranthe guttata HOM05D004492 ORTHO05D005602 8.4e-10 70.5 155 29.0
SEGI_04710 Sequoiadendron giganteum HOM05D004492 ORTHO05D005602 8.4e-10 70.5 103 35.0
Gorai.006G144800 Gossypium raimondii HOM05D007640 ORTHO05D009514 1.1e-09 70.1 282 27.3
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 1.4e-09 69.7 119 30.3
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 1.9e-09 69.3 278 24.8
Nn2g15795 Nelumbo nucifera HOM05D007640 ORTHO05D009514 3.2e-09 68.6 296 26.7
Ca_15216_v3 Cicer arietinum L. HOM05D004492 ORTHO05D005602 7.1e-09 67.4 152 28.9
Gohir.D09G125800 Gossypium hirsutum HOM05D007640 ORTHO05D009514 7.1e-09 67.4 282 27.0
PRCOL_00006858 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 9.3e-09 67.0 77 41.6
FAN14G0372 Fragaria x ananassa HOM05D007640 ORTHO05D009514 1.6e-08 66.2 292 24.7
Os10g0410700 Oryza sativa ssp. japonica HOM05D007640 ORTHO05D009514 2.7e-08 65.5 285 27.0
Thecc.08G119200 Theobroma cacao HOM05D004492 ORTHO05D005602 4.6e-08 64.7 287 24.0
HPP92_007944 Vanilla planifolia HOM05D007640 ORTHO05D009514 6.0e-08 64.3 286 26.2
FAN05G3009 Fragaria x ananassa HOM05D007640 ORTHO05D009514 7.9e-08 63.9 297 25.9
Cre01.g016450 Chlamydomonas reinhardtii HOM05D004492 ORTHO05D005602 1.0e-07 63.5 94 36.2
PRCOL_00002991 Prasinoderma coloniale HOM05D007640 ORTHO05D009514 1.8e-07 62.8 78 41.0
MD12G1052100 Malus domestica HOM05D007640 ORTHO05D009514 2.3e-07 62.4 285 24.9
Sopen03g011400 Solanum pennellii HOM05D007640 ORTHO05D009514 3.0e-07 62.0 279 25.1
Zm00001eb048280 Zea mays HOM05D007640 ORTHO05D009514 3.0e-07 62.0 64 42.2
CANSAT64G2384 Cannabis sativa HOM05D007640 ORTHO05D009514 3.9e-07 61.6 300 24.0
MCO11G526 Micromonas commoda HOM05D004492 ORTHO05D005602 3.9e-07 61.6 313 24.3
SEGI_21030 Sequoiadendron giganteum HOM05D007640 ORTHO05D009514 5.1e-07 61.2 321 24.6
Duzib128G2049 Durio zibethinus HOM05D007640 ORTHO05D009514 6.7e-07 60.8 93 34.4
Migut.K00015 Erythranthe guttata HOM05D007640 ORTHO05D009514 6.7e-07 60.8 281 22.4
MCO03G306 Micromonas commoda HOM05D004492 ORTHO05D005602 6.7e-07 60.8 103 36.9
FvH4_2g26270 Fragaria vesca HOM05D004492 ORTHO05D005602 8.7e-07 60.5 101 31.7
AagrBONN_evm.TU.Sc2ySwM_362.800 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.1e-06 60.1 68 39.7
Sed0005430 Sechium edule HOM05D007640 ORTHO05D009514 1.1e-06 60.1 277 24.5
Dinv16336 Davidia involucrata HOM05D007640 ORTHO05D009514 1.5e-06 59.7 64 43.8
MCO16G494 Micromonas commoda HOM05D001891 ORTHO05D009514 1.5e-06 59.7 83 38.6
Cfa020122 Carpinus fangiana HOM05D007640 ORTHO05D009514 1.9e-06 59.3 295 23.7
PGR031G3853 Punica granatum HOM05D007640 ORTHO05D009514 1.9e-06 59.3 296 25.3
AagrBONN_evm.TU.Sc2ySwM_368.2743 Anthoceros agrestis HOM05D006673 ORTHO05D008458 2.5e-06 58.9 311 23.8
Hma1.2p1_0038F.1_g023980 Hydrangea macrophylla HOM05D004492 ORTHO05D005602 3.3e-06 58.5 94 30.9
COL.COLO4_16026 Corchorus olitorius HOM05D007640 ORTHO05D009514 4.3e-06 58.2 94 34.0
Lsat_1_v5_gn_6_37700 Lactuca sativa HOM05D007640 ORTHO05D009514 4.3e-06 58.2 291 22.3
SGA_v2.0_scaffold94G28407 Striga asiatica HOM05D007640 ORTHO05D009514 4.3e-06 58.2 280 24.6
Thecc.05G179700 Theobroma cacao HOM05D007640 ORTHO05D009514 4.3e-06 58.2 288 25.0
TWI74G0757 Tripterygium wilfordii HOM05D007640 ORTHO05D009514 4.3e-06 58.2 64 40.6
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 7.4e-06 57.4 96 32.3
Lalb_Chr06g0173431 Lupinus albus HOM05D007640 ORTHO05D009514 9.6e-06 57.0 287 24.7
MCO14G073 Micromonas commoda HOM05D004492 ORTHO05D005602 9.6e-06 57.0 306 25.2


User provided reference genes

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