Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 0.0e+00 1906.0 915 100.0
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 4.1e-120 436.8 673 37.9
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 6.7e-46 190.3 648 26.7
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 8.7e-46 189.9 617 25.1
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 8.7e-46 189.9 642 26.3
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 3.3e-45 188.0 614 27.4
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 2.1e-44 185.3 636 25.5
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 2.8e-44 184.9 617 24.6
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 2.8e-44 184.9 619 25.0
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 6.2e-44 183.7 611 24.5
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 1.1e-43 183.0 601 24.5
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 1.4e-43 182.6 644 24.5
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 1.8e-43 182.2 618 24.9
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 2.4e-43 181.8 615 25.0
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 2.4e-43 181.8 639 24.7
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 3.1e-43 181.4 624 26.1
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 4.0e-43 181.0 624 26.6
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 1.2e-42 179.5 621 25.3
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 1.5e-42 179.1 635 25.4
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 1.5e-42 179.1 606 24.1
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 1.5e-42 179.1 627 24.6
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 3.4e-42 177.9 625 25.4
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 4.5e-42 177.6 645 25.0
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 4.5e-42 177.6 636 25.0
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 5.8e-42 177.2 616 25.3
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 7.6e-42 176.8 635 25.4
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 1.0e-41 176.4 629 24.3
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 2.2e-41 175.3 623 25.4
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 2.2e-41 175.3 612 26.1
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 6.5e-41 173.7 621 23.0
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 8.4e-41 173.3 644 24.2
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 1.1e-40 172.9 639 23.3
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 1.4e-40 172.6 625 25.6
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 2.5e-40 171.8 657 24.2
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 2.5e-40 171.8 650 24.2
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.5e-40 171.8 576 26.4
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 3.2e-40 171.4 617 25.1
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 4.2e-40 171.0 647 23.2
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 4.2e-40 171.0 615 26.2
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 1.2e-39 169.5 624 24.4
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 1.2e-39 169.5 623 24.1
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 1.2e-39 169.5 607 24.5
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 1.6e-39 169.1 677 23.0
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 2.1e-39 168.7 647 24.1
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 2.7e-39 168.3 634 23.3
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 2.7e-39 168.3 642 23.8
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 2.7e-39 168.3 614 24.3
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 3.5e-39 167.9 646 23.2
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 3.5e-39 167.9 605 24.8
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 3.5e-39 167.9 607 24.5
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 6.1e-39 167.2 608 24.3
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 7.9e-39 166.8 692 23.4
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 1.0e-38 166.4 614 24.8
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 1.0e-38 166.4 614 24.8
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 1.3e-38 166.0 604 24.7
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 1.3e-38 166.0 643 24.0
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 2.3e-38 165.2 622 24.0
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 2.3e-38 165.2 642 24.5
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 2.3e-38 165.2 642 24.5
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 2.3e-38 165.2 574 26.0
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 2.3e-38 165.2 628 24.0
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 2.3e-38 165.2 640 24.2
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 3.0e-38 164.9 645 24.7
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 3.0e-38 164.9 619 25.2
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 3.0e-38 164.9 649 23.4
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 3.0e-38 164.9 609 25.9
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 3.0e-38 164.9 625 24.5
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 3.9e-38 164.5 655 24.1
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 3.9e-38 164.5 673 24.8
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 5.1e-38 164.1 642 24.3
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 5.1e-38 164.1 624 23.6
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 6.7e-38 163.7 642 23.5
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 6.7e-38 163.7 638 23.5
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 6.7e-38 163.7 626 25.4
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 8.7e-38 163.3 633 23.9
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 8.7e-38 163.3 620 23.9
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 1.1e-37 162.9 639 23.6
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 1.1e-37 162.9 612 24.3
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 1.5e-37 162.5 620 24.4
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 1.5e-37 162.5 631 23.9
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 1.9e-37 162.2 632 23.4
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 2.5e-37 161.8 600 24.5
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 3.3e-37 161.4 646 23.8
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 3.3e-37 161.4 646 23.8
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 4.3e-37 161.0 621 23.7
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 4.3e-37 161.0 642 24.0
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 4.3e-37 161.0 656 25.9
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 5.7e-37 160.6 642 23.4
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 5.7e-37 160.6 676 22.8
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 5.7e-37 160.6 616 24.7
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 7.4e-37 160.2 607 24.7
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 1.3e-36 159.5 629 24.3
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 1.6e-36 159.1 616 24.0
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 1.6e-36 159.1 570 25.4
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 2.2e-36 158.7 644 23.9
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 2.2e-36 158.7 614 23.6
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 2.2e-36 158.7 631 24.1
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 2.8e-36 158.3 646 23.5
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 2.8e-36 158.3 657 23.7
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 3.7e-36 157.9 577 25.1
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 6.3e-36 157.1 646 23.7
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 6.3e-36 157.1 629 24.2
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 8.2e-36 156.8 647 22.9
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 1.4e-35 156.0 646 23.5
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 1.4e-35 156.0 652 23.3
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 1.8e-35 155.6 622 24.3
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 4.1e-35 154.5 624 24.0
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 4.1e-35 154.5 638 25.2
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 4.1e-35 154.5 621 24.6
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 6.9e-35 153.7 597 23.8
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 6.9e-35 153.7 551 24.0
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 9.0e-35 153.3 657 22.7
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 1.5e-34 152.5 623 24.9
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 2.0e-34 152.1 637 23.5
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 2.6e-34 151.8 624 23.6
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.3e-33 149.4 627 23.6
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 1.3e-33 149.4 644 22.7
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 2.3e-30 138.7 603 22.7
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 5.1e-30 137.5 564 22.5
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 6.7e-30 137.1 630 22.7
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 6.7e-30 137.1 630 22.7
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 1.5e-29 136.0 569 22.8
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 2.0e-29 135.6 619 24.2
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 9.7e-29 133.3 552 23.2
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 5.3e-27 127.5 584 24.8
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 1.1e-24 119.8 567 22.4
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 1.7e-17 95.9 163 31.9
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 1.7e-17 95.9 522 23.6
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 1.6e-10 72.8 180 28.9
Nitab4.5_0013033g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.7e-07 62.0 223 26.9
Zm00001eb223050 Zea mays HOM05D003117 ORTHO05D003612 2.7e-07 62.0 399 21.6
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 3.6e-07 61.6 238 26.1
Cfa024138 Carpinus fangiana HOM05D003117 ORTHO05D003612 1.4e-06 59.7 189 23.3
Nitab4.5_0007710g0050 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.8e-06 59.3 207 28.5
Migut.G00413 Erythranthe guttata HOM05D003117 ORTHO05D003612 8.8e-06 57.0 239 24.7
HPP92_024855 Vanilla planifolia HOM05D003117 ORTHO05D003612 8.8e-06 57.0 241 22.4


User provided reference genes

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