Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.4e-173 612.8 303 100.0
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.7e-12 77.0 166 34.9
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 2.7e-12 77.0 166 33.1
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 3.6e-12 76.6 162 31.5
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 6.1e-12 75.9 205 32.7
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 7.9e-12 75.5 164 34.1
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-11 75.1 178 34.3
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.0e-11 75.1 240 30.8
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.9e-11 73.2 164 34.1
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 3.9e-11 73.2 166 33.1
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-10 71.6 167 30.5
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-10 71.6 164 32.9
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-10 71.6 164 32.9
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.1e-10 71.6 164 32.9
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.5e-10 71.2 162 32.1
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.5e-10 71.2 166 31.9
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.5e-10 71.2 153 31.4
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.5e-10 71.2 222 27.0
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-10 70.9 179 34.6
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 2.0e-10 70.9 179 34.1
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 2.0e-10 70.9 179 34.1
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 2.0e-10 70.9 179 34.1
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.0e-10 70.9 179 34.6
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 2.0e-10 70.9 179 34.1
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.0e-10 70.9 169 31.4
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.6e-10 70.5 149 33.6
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.6e-10 70.5 210 31.9
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.3e-10 70.1 164 31.1
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 3.3e-10 70.1 179 34.1
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 3.3e-10 70.1 166 33.1
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.3e-10 70.1 167 32.3
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.3e-10 70.1 188 32.4
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 4.4e-10 69.7 151 29.8
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 5.7e-10 69.3 172 33.1
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 5.7e-10 69.3 159 32.1
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 7.4e-10 68.9 164 31.1
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.7e-10 68.6 152 32.2
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.3e-09 68.2 162 34.6
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-09 68.2 155 32.9
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.3e-09 68.2 173 30.6
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.3e-09 68.2 152 32.9
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.7e-09 67.8 162 32.7
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 2.2e-09 67.4 162 34.0
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.2e-09 67.4 151 31.1
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 2.2e-09 67.4 162 30.2
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.2e-09 67.4 164 31.1
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.2e-09 67.4 208 30.3
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 2.8e-09 67.0 164 29.3
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.8e-09 67.0 188 31.4
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.7e-09 66.6 165 31.5
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 3.7e-09 66.6 149 32.2
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 3.7e-09 66.6 169 30.8
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 3.7e-09 66.6 165 31.5
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 4.8e-09 66.2 184 28.8
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 4.8e-09 66.2 164 30.5
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.8e-09 66.2 164 29.9
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 4.8e-09 66.2 164 30.5
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 4.8e-09 66.2 187 28.9
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 4.8e-09 66.2 166 30.7
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 4.8e-09 66.2 165 29.7
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 6.3e-09 65.9 198 28.3
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 6.3e-09 65.9 200 30.0
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 8.2e-09 65.5 197 27.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 8.2e-09 65.5 162 32.1
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.1e-08 65.1 165 30.3
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.1e-08 65.1 150 31.3
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.1e-08 65.1 164 32.9
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-08 65.1 199 29.6
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.4e-08 64.7 149 32.2
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.8e-08 64.3 152 32.2
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.8e-08 64.3 153 29.4
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.8e-08 64.3 188 29.8
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.8e-08 64.3 167 31.7
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.8e-08 64.3 197 28.9
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.8e-08 64.3 152 30.3
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.8e-08 64.3 200 31.5
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.8e-08 64.3 153 29.4
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.8e-08 64.3 152 32.2
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 2.4e-08 63.9 164 31.1
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 2.4e-08 63.9 162 31.5
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.4e-08 63.9 156 30.1
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 2.4e-08 63.9 165 30.9
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.4e-08 63.9 162 31.5
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 2.4e-08 63.9 148 28.4
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 3.1e-08 63.5 161 32.3
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 3.1e-08 63.5 151 31.1
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 3.1e-08 63.5 148 30.4
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 3.1e-08 63.5 171 30.4
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.1e-08 63.5 208 29.3
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 3.1e-08 63.5 182 29.1
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 3.1e-08 63.5 148 29.7
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 3.1e-08 63.5 148 27.7
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.1e-08 63.2 166 30.1
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 4.1e-08 63.2 149 30.2
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 4.1e-08 63.2 191 26.7
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 4.1e-08 63.2 164 32.3
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 5.3e-08 62.8 152 30.9
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 5.3e-08 62.8 161 29.2
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 5.3e-08 62.8 159 30.8
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 5.3e-08 62.8 162 30.9
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 7.0e-08 62.4 153 30.1
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 7.0e-08 62.4 148 29.1
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 9.1e-08 62.0 201 29.9
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.2e-07 61.6 160 30.0
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.2e-07 61.6 148 28.4
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.5e-07 61.2 154 30.5
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 2.0e-07 60.8 148 29.7
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.0e-07 60.8 152 30.3
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.0e-07 60.8 178 31.5
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 2.6e-07 60.5 160 30.0
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 2.6e-07 60.5 149 28.2
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 3.4e-07 60.1 149 29.5
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 3.4e-07 60.1 160 29.4
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.4e-07 60.1 188 26.1
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 3.4e-07 60.1 166 28.9
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 3.4e-07 60.1 218 27.5
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.5e-07 59.7 153 28.8
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 4.5e-07 59.7 149 31.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 5.9e-07 59.3 132 31.1
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.9e-07 59.3 153 30.1
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 7.7e-07 58.9 134 32.1
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 7.7e-07 58.9 196 27.6
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-06 58.2 154 31.8
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.3e-06 58.2 154 31.8
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.3e-06 58.2 154 31.8
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.7e-06 57.8 118 33.1
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.2e-06 57.4 132 30.3
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.2e-06 57.4 161 31.1
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 2.9e-06 57.0 154 31.8
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 3.8e-06 56.6 154 31.8
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 3.8e-06 56.6 148 28.4
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 5.0e-06 56.2 118 34.7
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 8.5e-06 55.5 118 30.5
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 8.5e-06 55.5 158 32.9


User provided reference genes

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