Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024138 Carpinus fangiana HOM05D003117 ORTHO05D003612 0.0e+00 1343.6 662 100.0
Cfa023991 Carpinus fangiana HOM05D003117 ORTHO05D026663 7.1e-90 335.9 709 32.7
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 1.9e-18 98.6 237 30.8
BcaC09g50117 Brassica carinata HOM05D003117 ORTHO05D003612 2.5e-18 98.2 245 31.4
C01p28830 Brassica napus HOM05D003117 ORTHO05D003612 2.5e-18 98.2 245 31.4
BolC1t02811H Brassica oleracea HOM05D003117 ORTHO05D003612 2.5e-18 98.2 245 31.4
BraA01t02227Z Brassica rapa HOM05D003117 ORTHO05D003612 2.5e-18 98.2 245 31.4
Peaxi162Scf00019g03119 Petunia axillaris HOM05D003117 ORTHO05D003612 2.5e-18 98.2 242 30.6
BcaNung00363 Brassica carinata HOM05D003117 ORTHO05D003612 5.6e-18 97.1 252 32.1
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 1.2e-17 95.9 244 31.1
PGSC0003DMG400013444 Solanum tuberosum HOM05D003117 ORTHO05D003612 2.8e-17 94.7 238 31.1
Migut.G00413 Erythranthe guttata HOM05D003117 ORTHO05D003612 6.2e-17 93.6 236 29.2
Eucgr.H00221 Eucalyptus grandis HOM05D003117 ORTHO05D003612 6.2e-17 93.6 248 27.8
Solyc03g005340.4 Solanum lycopersicum HOM05D003117 ORTHO05D003612 6.2e-17 93.6 238 31.1
BcaC08g44280 Brassica carinata HOM05D003117 ORTHO05D003612 8.0e-17 93.2 252 30.6
C06p16990 Brassica napus HOM05D003117 ORTHO05D003612 8.0e-17 93.2 252 30.6
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 1.0e-16 92.8 243 30.9
BolC6t36899H Brassica oleracea HOM05D003117 ORTHO05D003612 1.8e-16 92.0 252 30.6
Gohir.A09G221900 Gossypium hirsutum HOM05D003117 ORTHO05D003612 1.8e-16 92.0 248 28.6
PSO210G4228 Papaver somniferum HOM05D003117 ORTHO05D003612 1.8e-16 92.0 240 30.4
PSO210G4691 Papaver somniferum HOM05D003117 ORTHO05D003612 1.8e-16 92.0 239 30.5
Pp3c7_25140 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.8e-16 92.0 253 32.0
BraA05t20573Z Brassica rapa HOM05D003117 ORTHO05D003612 2.3e-16 91.7 249 30.1
Nitab4.5_0001856g0040 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.3e-16 91.7 237 29.1
A05p16700 Brassica napus HOM05D003117 ORTHO05D003612 3.1e-16 91.3 249 30.1
Cc03_g04630 Coffea canephora HOM05D003117 ORTHO05D003612 3.1e-16 91.3 235 29.8
Solyc09g083130.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 4.0e-16 90.9 237 28.3
Sopen09g032010 Solanum pennellii HOM05D003117 ORTHO05D003612 4.0e-16 90.9 237 28.3
HanXRQChr12g0363751 Helianthus annuus HOM05D003117 ORTHO05D003612 6.8e-16 90.1 238 28.6
PSO832G4175 Papaver somniferum HOM05D003117 ORTHO05D003612 6.8e-16 90.1 240 30.8
Aqoxy5G00365 Aquilegia oxysepala HOM05D003117 ORTHO05D003612 8.9e-16 89.7 237 30.8
Eucgr.H00222 Eucalyptus grandis HOM05D003117 ORTHO05D003612 8.9e-16 89.7 252 28.6
Peaxi162Scf00578g00525 Petunia axillaris HOM05D003117 ORTHO05D003612 8.9e-16 89.7 235 30.2
Gorai.006G245500 Gossypium raimondii HOM05D003117 ORTHO05D003612 1.2e-15 89.4 246 27.6
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 1.2e-15 89.4 251 28.7
Aa31LG9G2760 Aethionema arabicum HOM05D003117 ORTHO05D003612 1.5e-15 89.0 251 29.9
MSTRG.9934 Avicennia marina HOM05D003117 ORTHO05D003612 1.5e-15 89.0 242 27.3
COL.COLO4_15764 Corchorus olitorius HOM05D003117 ORTHO05D003612 1.5e-15 89.0 249 28.5
BcaB04g18243 Brassica carinata HOM05D003117 ORTHO05D003612 2.0e-15 88.6 248 29.4
Nitab4.5_0007710g0050 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.0e-15 88.6 230 28.7
Nitab4.5_0013033g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.0e-15 88.6 230 29.1
PSO210G5858 Papaver somniferum HOM05D003117 ORTHO05D003612 2.6e-15 88.2 240 30.4
Gohir.D09G224000 Gossypium hirsutum HOM05D003117 ORTHO05D003612 3.4e-15 87.8 246 27.2
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 4.4e-15 87.4 354 28.2
Sc25g0004180 Simmondsia chinensis HOM05D003117 ORTHO05D003612 4.4e-15 87.4 236 28.4
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 5.8e-15 87.0 250 28.4
Ah.01g008550 Amaranthus hybridus HOM05D003117 ORTHO05D003612 7.5e-15 86.7 238 28.2
CAN.G749.36 Capsicum annuum HOM05D003117 ORTHO05D003612 7.5e-15 86.7 237 28.3
GSVIVG01018091001 Vitis vinifera HOM05D003117 ORTHO05D003612 7.5e-15 86.7 250 27.2
BraA08t33117Z Brassica rapa HOM05D003117 ORTHO05D003612 9.8e-15 86.3 248 28.6
A08p11210 Brassica napus HOM05D003117 ORTHO05D003612 1.3e-14 85.9 248 28.6
Sp7g12660 Schrenkiella parvula HOM05D003117 ORTHO05D003612 1.3e-14 85.9 248 28.6
AL7G41570 Arabidopsis lyrata HOM05D003117 ORTHO05D003612 1.7e-14 85.5 224 30.8
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 1.7e-14 85.5 253 27.7
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.7e-14 85.5 245 29.4
Dinv44609 Davidia involucrata HOM05D003117 ORTHO05D003612 1.7e-14 85.5 243 26.7
Hund06426 Selenicereus undatus HOM05D003117 ORTHO05D003612 1.7e-14 85.5 240 30.0
Zm00001eb048000 Zea mays HOM05D003117 ORTHO05D003612 1.7e-14 85.5 358 26.0
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 2.2e-14 85.1 245 29.4
MBI11_g15904_MAGBIO Magnolia biondii HOM05D003117 ORTHO05D003612 2.2e-14 85.1 265 28.3
Nn1g02533 Nelumbo nucifera HOM05D003117 ORTHO05D003612 2.2e-14 85.1 229 29.3
TAR633G0296 Trochodendron aralioides HOM05D003117 ORTHO05D003612 2.2e-14 85.1 233 27.9
CANSAT78G2141 Cannabis sativa HOM05D003117 ORTHO05D003612 2.9e-14 84.7 236 28.4
A01p23180 Brassica napus HOM05D003117 ORTHO05D003612 3.7e-14 84.3 247 29.6
Cre05.g241650 Chlamydomonas reinhardtii HOM05D003117 ORTHO05D003612 3.7e-14 84.3 201 35.3
Duzib151G0985 Durio zibethinus HOM05D003117 ORTHO05D003612 3.7e-14 84.3 247 28.7
HPP92_024855 Vanilla planifolia HOM05D003117 ORTHO05D003612 3.7e-14 84.3 329 27.4
Zm00001eb223050 Zea mays HOM05D003117 ORTHO05D003612 3.7e-14 84.3 255 30.6
Lj6C653G15 Lonicera japonica HOM05D003117 ORTHO05D003612 4.9e-14 84.0 235 27.7
RcHm_v2.0_Chr4g0389461 Rosa chinensis HOM05D003117 ORTHO05D003612 4.9e-14 84.0 256 27.7
CARHR220780 Cardamine hirsuta HOM05D003117 ORTHO05D003612 6.4e-14 83.6 239 29.7
Thecc.04G243500 Theobroma cacao HOM05D003117 ORTHO05D003612 6.4e-14 83.6 252 27.0
PGR142G3261 Punica granatum HOM05D003117 ORTHO05D003612 8.3e-14 83.2 251 27.5
SGA_v2.0_scaffold88G27334 Striga asiatica HOM05D003117 ORTHO05D003612 8.3e-14 83.2 249 28.1
AUR62013049 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.1e-13 82.8 245 29.8
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.1e-13 82.8 256 30.9
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 1.1e-13 82.8 236 27.1
AT4G14570 Arabidopsis thaliana HOM05D003117 ORTHO05D003612 1.4e-13 82.4 241 29.9
AUR62027936 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.4e-13 82.4 245 29.0
Ciclev10004325m.g Citrus clementina HOM05D003117 ORTHO05D003612 1.4e-13 82.4 237 29.1
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 1.4e-13 82.4 224 32.1
SalBow2G0949 Salvia bowleyana HOM05D003117 ORTHO05D003612 1.4e-13 82.4 235 27.7
Carub.0007s2764 Capsella rubella HOM05D003117 ORTHO05D003612 1.9e-13 82.0 241 28.6
CSS0025557 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 2.4e-13 81.6 243 27.2
CSS0037722 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 2.4e-13 81.6 243 27.2
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 2.4e-13 81.6 236 26.3
Actinidia04495 Actinidia chinensis HOM05D003117 ORTHO05D003612 4.1e-13 80.9 245 28.6
Thhalv10024477m.g Eutrema salsugineum HOM05D003117 ORTHO05D003612 4.1e-13 80.9 251 29.5
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 4.1e-13 80.9 236 26.7
DCAR_030706 Daucus carota HOM05D003117 ORTHO05D003612 5.4e-13 80.5 222 28.8
Rhsim04G0195100 Rhododendron simsii HOM05D003117 ORTHO05D003612 5.4e-13 80.5 241 27.0
FAN12G0712 Fragaria x ananassa HOM05D003117 ORTHO05D003612 7.0e-13 80.1 256 27.7
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 7.0e-13 80.1 261 27.2
vmacro08397 Vaccinium macrocarpon HOM05D003117 ORTHO05D003612 7.0e-13 80.1 242 27.3
Nitab4.5_0007585g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 9.2e-13 79.7 237 27.8
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 1.2e-12 79.3 165 34.5
Actinidia15262 Actinidia chinensis HOM05D003475 ORTHO05D004155 2.0e-12 78.6 255 26.7
Lsat_1_v5_gn_5_67900 Lactuca sativa HOM05D003117 ORTHO05D003612 4.6e-12 77.4 234 26.1
Os10g0415800 Oryza sativa ssp. japonica HOM05D003117 ORTHO05D003612 4.6e-12 77.4 253 28.9
AagrBONN_evm.TU.Sc2ySwM_228.3095 Anthoceros agrestis HOM05D003475 ORTHO05D026663 7.8e-12 76.6 354 24.3
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 1.3e-11 75.9 244 25.0
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 2.3e-11 75.1 231 28.1
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 5.0e-11 73.9 351 24.2
PSO210G1820 Papaver somniferum HOM05D003117 ORTHO05D003612 6.6e-11 73.6 227 30.0
Pp3c12_21080 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.1e-10 72.8 196 31.6
PRCOL_00005577 Prasinoderma coloniale HOM05D003475 ORTHO05D004155 1.1e-10 72.8 255 25.5
AUR62010057 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.9e-10 72.0 120 39.2
Mapoly0175s0001 Marchantia polymorpha HOM05D003475 ORTHO05D026663 1.9e-10 72.0 252 27.0
Lsat_1_v5_gn_5_67880 Lactuca sativa HOM05D003117 ORTHO05D003612 3.3e-10 71.2 221 27.6
QL06p015015 Quercus lobata HOM05D003117 ORTHO05D003612 5.6e-10 70.5 258 27.5
CSS0007643 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 7.3e-10 70.1 269 25.3
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 7.3e-10 70.1 192 28.1
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 7.3e-10 70.1 236 25.4
PRCOL_00005468 Prasinoderma coloniale HOM05D003117 ORTHO05D003612 9.5e-10 69.7 279 27.6
CAN.G749.34 Capsicum annuum HOM05D003117 ORTHO05D003612 1.4e-08 65.9 147 31.3
Rhsim06G0046300 Rhododendron simsii HOM05D003475 ORTHO05D004155 8.9e-08 63.2 191 26.7
Cfa024496 Carpinus fangiana HOM05D003117 ORTHO05D123009 5.8e-07 60.5 219 23.3
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 9.8e-07 59.7 189 23.3
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.3e-06 59.3 127 30.7
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 1.7e-06 58.9 294 26.9
vmacro21559 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 1.7e-06 58.9 280 25.4


User provided reference genes

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