Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 7.0e-256 886.7 427 100.0
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 7.7e-45 185.7 396 33.8
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 1.7e-44 184.5 387 35.4
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.9e-43 181.0 372 33.3
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 3.2e-43 180.3 379 33.0
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.6e-42 177.9 399 34.1
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.7e-42 177.2 368 34.5
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 4.7e-42 176.4 397 32.7
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 7.9e-42 175.6 369 33.9
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 7.9e-42 175.6 387 32.8
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.4e-41 174.9 389 34.4
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.3e-41 174.1 392 33.9
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.0e-41 173.7 402 33.6
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.1e-40 171.8 399 32.1
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 1.5e-40 171.4 417 31.7
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.5e-40 171.4 388 31.4
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 2.0e-40 171.0 384 33.3
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 3.3e-40 170.2 382 32.2
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 3.3e-40 170.2 399 31.8
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 5.7e-40 169.5 377 32.4
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 5.7e-40 169.5 402 32.8
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 7.4e-40 169.1 395 33.9
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.4e-40 169.1 377 32.4
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 9.7e-40 168.7 400 32.2
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.3e-39 168.3 395 33.9
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.3e-39 168.3 411 30.9
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.3e-39 168.3 372 31.7
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.7e-39 167.9 382 33.2
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.7e-39 167.9 392 31.6
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 2.2e-39 167.5 397 33.5
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.2e-39 167.5 361 33.0
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.2e-39 167.5 397 31.5
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 2.2e-39 167.5 376 32.4
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 2.8e-39 167.2 387 32.0
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 3.7e-39 166.8 377 32.6
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 3.7e-39 166.8 387 33.3
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 3.7e-39 166.8 404 32.4
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 4.8e-39 166.4 380 33.2
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 6.3e-39 166.0 391 32.2
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 6.3e-39 166.0 397 31.0
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 8.2e-39 165.6 377 32.4
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 8.2e-39 165.6 368 33.4
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 8.2e-39 165.6 392 31.6
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.1e-38 165.2 397 33.2
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.1e-38 165.2 397 33.2
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.1e-38 165.2 369 34.7
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 1.1e-38 165.2 401 32.2
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.1e-38 165.2 376 31.9
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 1.4e-38 164.9 383 32.4
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.8e-38 164.5 363 31.4
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 1.8e-38 164.5 408 31.4
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.8e-38 164.5 382 31.9
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 2.4e-38 164.1 378 32.3
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 3.1e-38 163.7 375 32.3
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 4.1e-38 163.3 399 32.6
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 5.3e-38 162.9 386 33.7
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 5.3e-38 162.9 371 33.2
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 5.3e-38 162.9 403 30.8
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 7.0e-38 162.5 388 30.9
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 7.0e-38 162.5 396 32.8
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 7.0e-38 162.5 413 31.7
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 9.1e-38 162.2 365 32.1
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.2e-37 161.8 392 31.6
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.2e-37 161.8 402 32.3
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 1.2e-37 161.8 326 33.4
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 1.5e-37 161.4 346 35.5
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.5e-37 161.4 370 31.9
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 2.0e-37 161.0 360 31.4
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 2.0e-37 161.0 397 31.2
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.0e-37 161.0 387 31.5
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 2.0e-37 161.0 363 31.7
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 2.0e-37 161.0 381 32.3
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 2.6e-37 160.6 382 30.9
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 2.6e-37 160.6 366 32.8
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 3.5e-37 160.2 370 31.9
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 4.5e-37 159.8 366 32.2
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 7.7e-37 159.1 393 32.1
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 7.7e-37 159.1 395 31.9
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.0e-36 158.7 409 31.5
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 1.0e-36 158.7 387 31.5
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 1.3e-36 158.3 401 31.9
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.7e-36 157.9 373 31.1
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.7e-36 157.9 427 31.1
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 1.7e-36 157.9 360 32.8
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 6.5e-36 156.0 399 30.8
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 8.5e-36 155.6 373 30.8
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 8.5e-36 155.6 362 31.2
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 8.5e-36 155.6 375 31.5
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.1e-35 155.2 388 32.2
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.9e-35 154.5 371 30.5
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 3.2e-35 153.7 422 31.5
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.2e-35 153.7 422 31.5
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 4.2e-35 153.3 375 30.1
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 9.4e-35 152.1 418 30.4
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 2.7e-34 150.6 350 30.9
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 4.7e-34 149.8 324 32.7
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 4.7e-34 149.8 360 32.5
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 8.0e-34 149.1 407 30.7
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 2.3e-33 147.5 413 29.8
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 6.7e-33 146.0 394 31.7
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 8.8e-33 145.6 360 31.1
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-32 145.2 402 29.1
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 1.1e-32 145.2 398 31.2
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 2.0e-32 144.4 408 30.1
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 2.0e-32 144.4 362 30.4
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.6e-32 144.1 428 28.7
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.3e-32 143.7 360 30.3
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 4.4e-32 143.3 425 29.2
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 5.7e-32 142.9 375 31.5
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 9.7e-32 142.1 373 29.5
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 9.7e-32 142.1 379 30.3
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.3e-31 141.7 406 31.0
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 5.3e-30 136.3 421 28.7
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 5.3e-30 136.3 386 28.8
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 5.3e-30 136.3 349 30.4
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.6e-29 134.8 396 29.3
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.5e-29 133.7 393 28.2
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.0e-28 132.1 407 29.2
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 2.2e-28 131.0 393 28.5
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 3.8e-28 130.2 291 33.7
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 6.5e-28 129.4 285 32.6
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 6.5e-28 129.4 246 33.3
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.5e-28 129.0 428 29.0
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 2.5e-27 127.5 359 30.6
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.6e-26 124.8 425 27.5
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.1e-26 124.4 258 33.7
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.1e-26 124.4 249 31.7
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.8e-25 121.3 398 28.9
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 4.0e-25 120.2 455 26.6
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 2.0e-24 117.9 350 29.1
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.8e-23 113.2 300 29.3
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 1.8e-22 111.3 331 29.0
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.0e-21 107.8 396 28.5
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.7e-21 105.9 363 27.8
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.8e-20 103.6 419 28.9
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.1e-19 102.1 212 35.4
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.2e-19 100.5 492 24.2
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 4.2e-19 100.1 270 29.3
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.6e-18 98.2 298 27.5
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 2.7e-18 97.4 210 34.3
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 2.3e-17 94.4 360 27.2
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 4.9e-15 86.7 200 29.5
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.8e-12 77.0 301 24.6
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 5.0e-12 76.6 169 29.6
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 8.6e-12 75.9 130 35.4
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.5e-11 75.1 264 27.7


User provided reference genes

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