Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 0.0e+00 2058.9 1126 100.0
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 7.1e-74 283.5 228 65.4
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 3.5e-73 281.2 230 63.5
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 3.9e-72 277.7 237 61.6
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 5.6e-71 273.9 229 61.1
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 1.6e-70 272.3 229 61.1
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.8e-70 271.6 229 60.3
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 3.7e-70 271.2 237 60.8
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 4.8e-70 270.8 229 62.0
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 4.8e-70 270.8 229 62.0
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 4.8e-70 270.8 229 60.7
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 6.2e-70 270.4 229 61.1
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 6.2e-70 270.4 229 60.3
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 6.2e-70 270.4 228 61.8
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 6.2e-70 270.4 228 61.8
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 6.2e-70 270.4 230 60.4
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 6.2e-70 270.4 229 60.7
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 8.2e-70 270.0 229 60.3
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 8.2e-70 270.0 229 59.4
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 8.2e-70 270.0 229 60.7
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.1e-69 269.6 229 60.7
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.1e-69 269.6 228 61.8
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.1e-69 269.6 228 61.8
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-69 269.6 228 61.8
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 1.1e-69 269.6 229 61.1
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.8e-69 268.9 229 60.7
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.8e-69 268.9 229 60.7
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.8e-69 268.9 229 60.3
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 2.4e-69 268.5 229 59.8
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 2.4e-69 268.5 229 59.4
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 2.4e-69 268.5 229 59.4
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 2.4e-69 268.5 229 59.4
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 2.4e-69 268.5 229 59.4
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 2.4e-69 268.5 229 60.3
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 2.4e-69 268.5 228 60.1
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 2.4e-69 268.5 229 60.7
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 2.4e-69 268.5 229 60.7
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 3.1e-69 268.1 229 59.8
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 3.1e-69 268.1 229 60.3
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 3.1e-69 268.1 229 60.3
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 3.1e-69 268.1 229 59.4
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 3.1e-69 268.1 229 59.4
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 4.0e-69 267.7 229 60.7
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 4.0e-69 267.7 229 59.4
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.0e-69 267.7 229 59.4
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.0e-69 267.7 229 59.4
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 4.0e-69 267.7 229 59.8
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 4.0e-69 267.7 229 60.3
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 4.0e-69 267.7 229 60.3
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.3e-69 267.3 229 60.3
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 5.3e-69 267.3 229 59.0
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 5.3e-69 267.3 229 59.8
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 5.3e-69 267.3 229 60.3
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 5.3e-69 267.3 229 59.4
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 5.3e-69 267.3 229 59.4
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 5.3e-69 267.3 229 59.0
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 6.9e-69 266.9 229 59.0
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.9e-69 266.9 229 59.4
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 6.9e-69 266.9 229 59.0
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 6.9e-69 266.9 229 60.3
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 6.9e-69 266.9 229 59.8
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 6.9e-69 266.9 229 59.8
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 6.9e-69 266.9 229 59.4
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 6.9e-69 266.9 229 60.3
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 9.0e-69 266.5 229 59.8
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 9.0e-69 266.5 229 59.0
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 9.0e-69 266.5 228 61.0
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 9.0e-69 266.5 229 59.8
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.0e-69 266.5 229 59.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 9.0e-69 266.5 229 59.0
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 9.0e-69 266.5 229 60.3
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 9.0e-69 266.5 229 59.8
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 9.0e-69 266.5 229 59.8
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.2e-68 266.2 229 59.4
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.2e-68 266.2 229 59.0
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.5e-68 265.8 229 60.7
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.5e-68 265.8 229 59.8
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.5e-68 265.8 229 60.3
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.0e-68 265.4 229 59.8
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 2.0e-68 265.4 229 59.0
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.0e-68 265.4 229 59.8
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 2.6e-68 265.0 229 58.5
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.6e-68 265.0 229 59.4
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.6e-68 265.0 229 59.4
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.6e-68 265.0 229 59.0
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 59.0
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 59.4
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 59.4
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 59.4
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 59.4
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 60.7
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 59.8
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 59.4
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 60.3
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 3.4e-68 264.6 229 59.0
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 4.5e-68 264.2 230 59.1
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 4.5e-68 264.2 229 59.4
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 4.5e-68 264.2 229 59.4
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 4.5e-68 264.2 229 59.4
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 4.5e-68 264.2 229 59.4
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 4.5e-68 264.2 229 58.5
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 5.8e-68 263.8 229 59.0
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 5.8e-68 263.8 229 59.0
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 7.6e-68 263.5 229 59.4
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 7.6e-68 263.5 229 59.0
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.0e-67 263.1 229 59.4
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 1.0e-67 263.1 229 59.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.0e-67 263.1 229 58.5
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.0e-67 263.1 229 59.0
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 1.7e-67 262.3 229 59.8
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 2.2e-67 261.9 229 58.5
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.9e-67 261.5 229 58.5
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 2.9e-67 261.5 229 59.4
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 2.9e-67 261.5 229 59.4
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 2.9e-67 261.5 219 61.6
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 2.9e-67 261.5 219 61.6
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 3.8e-67 261.2 229 58.1
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 3.8e-67 261.2 229 58.1
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 3.8e-67 261.2 229 59.4
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 3.8e-67 261.2 230 60.4
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.9e-67 260.8 229 58.1
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 4.9e-67 260.8 229 59.4
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 6.5e-67 260.4 228 58.3
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 8.4e-67 260.0 238 57.6
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 8.4e-67 260.0 229 59.8
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.1e-66 259.6 229 57.6
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.1e-66 259.6 233 57.5
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 1.9e-66 258.8 229 57.2
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 3.2e-66 258.1 214 60.7
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 5.5e-66 257.3 229 58.1
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 5.5e-66 257.3 222 59.0
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 7.1e-66 256.9 232 59.1
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.8e-64 252.3 229 57.6
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 3.0e-64 251.5 253 53.8
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 3.9e-64 251.1 209 59.8
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 6.7e-64 250.4 244 57.0
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 3.3e-63 248.1 197 62.9
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 8.2e-62 243.4 229 56.3
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 8.2e-62 243.4 190 63.7
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.8e-61 242.3 213 59.2
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.1e-61 241.5 214 60.3
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.1e-61 241.5 214 60.3
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 5.5e-58 230.7 198 60.1
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.0e-56 226.5 233 52.8
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.3e-56 225.3 158 68.4
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.7e-54 219.2 229 52.0
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 4.8e-54 217.6 156 67.3
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-53 216.5 179 62.6
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 1.4e-53 216.1 213 56.8
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.4e-53 216.1 179 62.6
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 3.4e-52 211.5 219 55.7
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 4.5e-52 211.1 195 56.9
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.3e-51 209.5 228 50.0
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.2e-49 203.0 229 48.9
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.6e-47 195.3 213 52.1
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 2.6e-44 185.3 158 58.9
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.0e-39 169.1 108 72.2
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.0e-36 159.1 102 72.5
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.1e-26 126.7 108 63.9
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 9.4e-26 123.6 92 67.4
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 9.8e-23 113.6 135 46.7
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 1.2e-17 96.7 102 50.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 1.6e-17 96.3 113 46.9
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.0e-16 93.6 118 44.1
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 3.0e-16 92.0 113 45.1
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.2e-15 90.1 110 48.2
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 8.3e-14 84.0 105 45.7
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 2.1e-09 69.3 235 28.9
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 2.3e-08 65.9 78 50.0
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 2.6e-07 62.4 93 40.9
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.3e-06 60.1 84 40.5


User provided reference genes

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