Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.7e-186 654.4 341 100.0
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.2e-10 70.9 147 34.0
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.4e-09 67.4 177 33.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 7.1e-09 65.9 175 34.9
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 7.1e-09 65.9 175 34.9
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 7.1e-09 65.9 176 31.8
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 7.1e-09 65.9 176 31.8
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 7.1e-09 65.9 177 31.6
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 9.2e-09 65.5 177 33.3
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 9.2e-09 65.5 177 33.3
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-08 65.1 121 35.5
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 2.1e-08 64.3 176 33.5
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 2.7e-08 63.9 200 32.5
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 3.5e-08 63.5 176 34.1
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 3.5e-08 63.5 177 35.0
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 3.5e-08 63.5 176 33.5
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 4.6e-08 63.2 177 32.8
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 7.8e-08 62.4 181 31.5
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 7.8e-08 62.4 177 32.2
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.0e-07 62.0 177 33.3
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.0e-07 62.0 177 32.2
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.0e-07 62.0 179 34.1
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.3e-07 61.6 176 32.4
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 1.3e-07 61.6 177 33.3
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.3e-07 61.6 176 34.7
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.7e-07 61.2 176 33.5
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.7e-07 61.2 176 33.0
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 1.7e-07 61.2 176 33.0
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.7e-07 61.2 182 31.9
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 2.3e-07 60.8 176 33.0
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.3e-07 60.8 176 33.0
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 2.3e-07 60.8 177 33.3
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 2.3e-07 60.8 177 33.3
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 2.3e-07 60.8 177 31.6
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 3.0e-07 60.5 176 33.0
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 3.0e-07 60.5 176 33.5
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 3.0e-07 60.5 185 30.8
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 3.0e-07 60.5 176 30.7
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 3.9e-07 60.1 190 31.1
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 3.9e-07 60.1 194 32.5
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 3.9e-07 60.1 177 32.8
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 3.9e-07 60.1 177 33.3
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 3.9e-07 60.1 177 29.9
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 3.9e-07 60.1 191 29.8
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.1e-07 59.7 176 33.0
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 5.1e-07 59.7 177 32.2
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 6.6e-07 59.3 176 32.4
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 6.6e-07 59.3 176 33.0
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 6.6e-07 59.3 176 32.4
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 6.6e-07 59.3 177 33.3
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 6.6e-07 59.3 176 33.5
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 6.6e-07 59.3 179 32.4
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 6.6e-07 59.3 177 31.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 6.6e-07 59.3 176 33.0
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 8.6e-07 58.9 176 32.4
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 8.6e-07 58.9 176 33.0
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 8.6e-07 58.9 175 31.4
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 8.6e-07 58.9 176 33.0
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 8.6e-07 58.9 176 33.0
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.1e-06 58.5 198 32.3
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 1.1e-06 58.5 198 32.3
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.1e-06 58.5 176 30.1
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.1e-06 58.5 176 32.4
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.1e-06 58.5 176 32.4
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.1e-06 58.5 176 32.4
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.1e-06 58.5 176 32.4
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 1.1e-06 58.5 176 33.5
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.1e-06 58.5 177 31.6
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.1e-06 58.5 177 32.2
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.5e-06 58.2 176 32.4
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 1.5e-06 58.2 176 32.4
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.5e-06 58.2 176 33.0
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.5e-06 58.2 242 27.3
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.5e-06 58.2 176 31.8
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.5e-06 58.2 181 30.4
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 1.9e-06 57.8 176 32.4
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.9e-06 57.8 176 31.8
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.9e-06 57.8 241 27.8
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 2.5e-06 57.4 176 31.8
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.5e-06 57.4 176 31.8
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.5e-06 57.4 176 31.8
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.5e-06 57.4 176 33.5
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 2.5e-06 57.4 178 32.0
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.5e-06 57.4 193 32.1
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 3.3e-06 57.0 179 31.3
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 3.3e-06 57.0 176 31.2
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 3.3e-06 57.0 177 30.5
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 3.3e-06 57.0 178 32.0
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 5.6e-06 56.2 177 32.8
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 5.6e-06 56.2 176 31.2
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 7.3e-06 55.8 176 30.7
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 9.6e-06 55.5 176 31.2
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 9.6e-06 55.5 176 31.8
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 9.6e-06 55.5 212 29.7
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 9.6e-06 55.5 176 30.1


User provided reference genes

Program Settings