Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 0.0e+00 2411.3 1175 100.0
PRCOL_00006713 Prasinoderma coloniale HOM05D040201 ORTHO05D034153 4.2e-77 294.3 573 33.5
Cre16.g686400 Chlamydomonas reinhardtii HOM05D040201 ORTHO05D034153 5.9e-71 273.9 556 31.7
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 5.1e-14 84.7 315 27.0
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 5.1e-14 84.7 315 27.0
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 3.6e-12 78.6 315 25.7
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 6.2e-12 77.8 303 24.8
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.1e-11 77.0 367 25.1
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.1e-11 77.0 315 25.7
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 5.8e-10 71.2 303 24.4
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 5.8e-10 71.2 322 24.8
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 5.8e-10 71.2 266 26.7
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.9e-09 68.2 146 32.9
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.9e-09 68.2 146 32.9
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.1e-08 67.0 148 29.1
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 1.4e-08 66.6 146 30.8
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.4e-08 66.6 316 23.7
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.4e-08 66.6 184 28.8
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 1.9e-08 66.2 141 31.2
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.9e-08 66.2 146 29.5
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.2e-08 65.5 151 29.1
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 5.4e-08 64.7 146 29.5
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 5.4e-08 64.7 146 30.1
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 5.4e-08 64.7 148 29.1
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 5.4e-08 64.7 148 29.7
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 7.1e-08 64.3 146 30.1
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 7.1e-08 64.3 328 24.7
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 9.3e-08 63.9 146 29.5
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 9.3e-08 63.9 146 29.5
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 9.3e-08 63.9 146 29.5
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 9.3e-08 63.9 146 29.5
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 9.3e-08 63.9 97 36.1
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 9.3e-08 63.9 148 29.1
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 9.3e-08 63.9 141 31.2
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.2e-07 63.5 97 35.1
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 1.2e-07 63.5 146 29.5
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.2e-07 63.5 146 28.1
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.6e-07 63.2 141 30.5
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.6e-07 63.2 141 30.5
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.6e-07 63.2 141 30.5
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.1e-07 62.8 103 34.0
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 2.1e-07 62.8 141 29.8
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.1e-07 62.8 146 28.8
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 2.1e-07 62.8 149 27.5
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 2.1e-07 62.8 141 30.5
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 2.1e-07 62.8 141 30.5
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.1e-07 62.8 141 30.5
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 2.1e-07 62.8 141 29.8
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 2.7e-07 62.4 97 34.0
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.7e-07 62.4 141 29.8
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.7e-07 62.4 148 29.1
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 2.7e-07 62.4 141 30.5
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.5e-07 62.0 146 28.1
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.5e-07 62.0 145 30.3
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 3.5e-07 62.0 146 28.8
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 3.5e-07 62.0 141 29.8
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 3.5e-07 62.0 146 28.8
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 4.6e-07 61.6 141 29.8
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 4.6e-07 61.6 141 29.8
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 4.6e-07 61.6 97 34.0
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 4.6e-07 61.6 97 34.0
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 4.6e-07 61.6 146 28.1
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 4.6e-07 61.6 141 29.8
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 4.6e-07 61.6 97 35.1
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 6.0e-07 61.2 141 29.1
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 6.0e-07 61.2 146 28.1
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 6.0e-07 61.2 146 28.1
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 6.0e-07 61.2 141 28.4
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 6.0e-07 61.2 141 29.1
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 6.0e-07 61.2 141 29.8
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 6.0e-07 61.2 93 36.6
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 6.0e-07 61.2 102 33.3
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 7.8e-07 60.8 141 29.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 7.8e-07 60.8 141 29.1
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 7.8e-07 60.8 148 27.7
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 7.8e-07 60.8 97 35.1
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 7.8e-07 60.8 141 29.1
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.0e-06 60.5 141 29.1
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 1.0e-06 60.5 143 29.4
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.0e-06 60.5 97 36.1
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.0e-06 60.5 141 29.1
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.0e-06 60.5 141 29.1
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 1.3e-06 60.1 143 29.4
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 1.3e-06 60.1 141 29.1
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.7e-06 59.7 143 29.4
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.7e-06 59.7 96 34.4
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.7e-06 59.7 141 30.5
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.7e-06 59.7 141 29.1
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.7e-06 59.7 142 28.9
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 2.3e-06 59.3 141 29.1
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 2.3e-06 59.3 143 28.7
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 2.3e-06 59.3 141 28.4
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.3e-06 59.3 141 28.4
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.3e-06 59.3 141 29.1
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 2.3e-06 59.3 100 32.0
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 2.3e-06 59.3 148 28.4
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 2.3e-06 59.3 142 28.2
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 2.3e-06 59.3 146 28.8
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 3.0e-06 58.9 143 28.7
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.0e-06 58.9 97 32.0
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.0e-06 58.9 141 29.1
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 3.0e-06 58.9 333 22.8
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 3.0e-06 58.9 141 27.0
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 3.9e-06 58.5 141 28.4
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 3.9e-06 58.5 141 28.4
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 3.9e-06 58.5 143 27.3
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 3.9e-06 58.5 143 27.3
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 5.1e-06 58.2 141 28.4
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.1e-06 58.2 148 27.7
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 6.6e-06 57.8 143 28.0
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 6.6e-06 57.8 143 27.3
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 6.6e-06 57.8 143 27.3
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 6.6e-06 57.8 143 28.0
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 6.6e-06 57.8 141 29.1
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 6.6e-06 57.8 143 28.7
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 8.7e-06 57.4 97 32.0
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 8.7e-06 57.4 146 26.7
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 8.7e-06 57.4 96 31.2


User provided reference genes

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