Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 1.0e-102 376.7 190 100.0
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 4.8e-23 112.1 139 42.4
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 4.8e-23 112.1 139 42.4
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 6.3e-23 111.7 139 42.4
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 1.4e-22 110.5 140 43.6
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.4e-22 110.5 142 39.4
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 2.4e-22 109.8 140 42.9
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.4e-22 109.8 140 42.9
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.4e-22 109.8 140 42.9
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.4e-22 109.8 140 42.9
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.4e-22 109.8 140 42.9
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 2.4e-22 109.8 142 41.5
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 2.4e-22 109.8 142 40.1
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 5.3e-22 108.6 142 40.1
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 6.9e-22 108.2 142 39.4
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 9.0e-22 107.8 142 40.1
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 2.0e-21 106.7 142 38.0
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 4.5e-21 105.5 157 37.6
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 4.5e-21 105.5 142 40.1
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 5.9e-21 105.1 140 38.6
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 1.0e-20 104.4 176 37.5
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 1.0e-20 104.4 142 38.7
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 1.0e-20 104.4 142 38.7
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 1.0e-20 104.4 140 40.0
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 1.3e-20 104.0 175 37.1
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 1.3e-20 104.0 140 40.0
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 1.7e-20 103.6 139 40.3
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 1.7e-20 103.6 173 35.3
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 2.2e-20 103.2 139 38.8
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 2.2e-20 103.2 139 38.8
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 2.2e-20 103.2 139 38.8
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 2.9e-20 102.8 140 40.7
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 2.9e-20 102.8 139 39.6
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 3.8e-20 102.4 140 39.3
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 5.0e-20 102.1 140 39.3
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 5.0e-20 102.1 140 39.3
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 5.0e-20 102.1 139 39.6
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 5.0e-20 102.1 139 39.6
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 5.0e-20 102.1 139 39.6
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 5.0e-20 102.1 139 39.6
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 5.0e-20 102.1 141 41.8
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 6.5e-20 101.7 139 38.1
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 6.5e-20 101.7 139 38.1
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 6.5e-20 101.7 142 40.1
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 6.5e-20 101.7 140 40.0
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 1.1e-19 100.9 139 37.4
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 1.1e-19 100.9 139 40.3
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 1.4e-19 100.5 137 40.9
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 1.9e-19 100.1 139 37.4
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 1.9e-19 100.1 139 37.4
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 1.9e-19 100.1 170 37.1
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 2.5e-19 99.8 140 37.9
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 2.5e-19 99.8 137 42.3
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 3.2e-19 99.4 139 37.4
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 3.2e-19 99.4 163 38.7
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 3.2e-19 99.4 137 41.6
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 4.2e-19 99.0 140 40.7
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 7.2e-19 98.2 140 38.6
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 7.2e-19 98.2 170 34.1
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 9.4e-19 97.8 140 36.4
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 9.4e-19 97.8 140 36.4
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 9.4e-19 97.8 140 35.0
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 9.4e-19 97.8 140 36.4
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 9.4e-19 97.8 140 39.3
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.2e-18 97.4 140 38.6
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 1.2e-18 97.4 130 41.5
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 2.1e-18 96.7 128 42.2
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 3.6e-18 95.9 88 50.0
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 3.6e-18 95.9 88 50.0
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 6.1e-18 95.1 86 51.2
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 6.1e-18 95.1 127 40.9
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 7.9e-18 94.7 88 50.0
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 1.0e-17 94.4 140 38.6
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.0e-17 94.4 88 48.9
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 1.4e-17 94.0 140 37.1
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 1.4e-17 94.0 142 37.3
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 1.4e-17 94.0 158 34.2
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 1.4e-17 94.0 158 34.2
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.4e-17 94.0 140 37.1
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.4e-17 94.0 86 48.8
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 1.8e-17 93.6 88 48.9
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 2.3e-17 93.2 142 36.6
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 2.3e-17 93.2 145 37.2
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 2.3e-17 93.2 88 48.9
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 2.3e-17 93.2 86 47.7
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 3.0e-17 92.8 140 37.9
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 3.0e-17 92.8 140 40.0
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 3.0e-17 92.8 172 33.7
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 3.9e-17 92.4 88 47.7
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 3.9e-17 92.4 164 36.0
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 5.1e-17 92.0 137 38.0
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 6.7e-17 91.7 86 50.0
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 6.7e-17 91.7 86 48.8
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 6.7e-17 91.7 86 47.7
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 6.7e-17 91.7 86 47.7
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 1.1e-16 90.9 86 48.8
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.1e-16 90.9 86 47.7
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.1e-16 90.9 86 47.7
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.1e-16 90.9 86 47.7
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 1.1e-16 90.9 86 46.5
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 1.1e-16 90.9 88 46.6
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 1.5e-16 90.5 86 50.0
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 2.0e-16 90.1 88 46.6
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 4.3e-16 89.0 86 50.0
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 7.4e-16 88.2 115 43.5
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 9.7e-16 87.8 86 46.5
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 9.7e-16 87.8 140 36.4
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 1.3e-15 87.4 78 51.3
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 1.3e-15 87.4 86 48.8
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 1.3e-15 87.4 86 48.8
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 1.7e-15 87.0 137 38.7
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 2.2e-15 86.7 88 45.5
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 4.8e-15 85.5 160 30.6
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 4.8e-15 85.5 86 47.7
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 1.1e-14 84.3 85 48.2
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 4.1e-14 82.4 149 35.6
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 4.1e-14 82.4 85 47.1
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 2.2e-12 76.6 116 36.2
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 3.2e-11 72.8 71 47.9
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 4.2e-11 72.4 62 51.6
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 5.5e-11 72.0 146 34.2
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 4.7e-10 68.9 100 40.0
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 4.7e-10 68.9 107 37.4
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 1.8e-09 67.0 65 46.2
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 2.3e-09 66.6 116 32.8
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 8.8e-09 64.7 62 48.4
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 8.8e-09 64.7 116 34.5
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 1.1e-08 64.3 137 29.2
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 1.5e-08 63.9 60 46.7
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 1.5e-08 63.9 60 46.7
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 2.0e-08 63.5 62 45.2
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 2.0e-08 63.5 60 48.3
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 2.6e-08 63.2 62 45.2
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.3e-08 62.8 60 48.3
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 1.3e-07 60.8 79 44.3
ATR0712G010 Amborella trichopoda HOM05D004024 ORTHO05D004639 2.8e-07 59.7 94 37.2
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 4.8e-07 58.9 62 45.2
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 4.8e-07 58.9 62 45.2
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 6.3e-07 58.5 60 45.0
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 2.4e-06 56.6 91 34.1
COL.COLO4_09773 Corchorus olitorius HOM05D004024 ORTHO05D004639 5.3e-06 55.5 84 36.9


User provided reference genes

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