Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.7e-192 675.2 364 100.0
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 9.8e-41 171.8 358 33.2
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 6.6e-37 159.1 354 30.5
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 6.6e-37 159.1 364 30.5
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.9e-36 157.5 361 30.5
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.5e-36 157.1 350 31.7
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 2.8e-35 153.7 358 30.7
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 4.7e-35 152.9 358 29.9
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 6.1e-35 152.5 359 29.8
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 8.0e-35 152.1 360 31.4
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.4e-34 151.4 363 31.4
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.4e-34 151.4 363 30.3
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 2.3e-34 150.6 363 30.9
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 6.8e-34 149.1 359 29.8
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 6.8e-34 149.1 359 32.6
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 8.9e-34 148.7 360 31.4
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 1.2e-33 148.3 357 31.4
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 1.2e-33 148.3 356 31.7
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 4.4e-33 146.4 357 30.8
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 5.7e-33 146.0 357 31.4
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 9.8e-33 145.2 360 31.4
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 9.8e-33 145.2 359 29.8
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.3e-32 144.8 359 29.5
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.7e-32 144.4 359 29.5
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 2.2e-32 144.1 360 31.1
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.2e-32 144.1 360 30.8
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 2.9e-32 143.7 353 30.9
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 2.9e-32 143.7 363 29.5
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 3.7e-32 143.3 359 29.8
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 4.9e-32 142.9 359 29.0
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 4.9e-32 142.9 363 28.7
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 8.3e-32 142.1 359 29.8
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.1e-31 141.7 354 30.5
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 1.1e-31 141.7 355 30.1
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.1e-31 141.7 357 30.8
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.1e-31 141.7 359 29.5
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.4e-31 141.4 353 30.9
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.4e-31 141.4 358 27.9
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 2.4e-31 140.6 363 27.3
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 3.2e-31 140.2 362 29.0
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 3.2e-31 140.2 354 30.5
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 3.2e-31 140.2 359 28.7
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 3.2e-31 140.2 356 30.3
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 4.1e-31 139.8 360 30.6
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 5.4e-31 139.4 357 30.0
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 7.0e-31 139.0 359 29.8
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 9.2e-31 138.7 356 29.2
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 9.2e-31 138.7 359 29.2
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 9.2e-31 138.7 354 29.4
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 1.2e-30 138.3 358 29.9
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.2e-30 138.3 359 29.5
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.2e-30 138.3 353 29.7
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.6e-30 137.9 359 30.4
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.6e-30 137.9 343 29.7
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 2.0e-30 137.5 361 29.9
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 2.0e-30 137.5 355 29.9
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 3.5e-30 136.7 367 28.9
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 5.9e-30 136.0 357 30.3
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 5.9e-30 136.0 357 27.5
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 7.8e-30 135.6 363 28.4
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.0e-29 135.2 351 29.3
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.7e-29 134.4 359 31.2
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 1.7e-29 134.4 359 30.4
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.7e-29 134.4 363 29.8
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.3e-29 134.0 360 27.8
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 3.9e-29 133.3 359 29.0
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 3.9e-29 133.3 357 28.3
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 5.0e-29 132.9 355 29.3
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 5.0e-29 132.9 405 25.9
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.6e-29 132.5 361 28.5
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.6e-29 132.5 361 28.5
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 6.6e-29 132.5 363 28.1
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.9e-28 131.0 357 28.3
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 2.5e-28 130.6 359 27.6
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 3.3e-28 130.2 388 27.6
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 5.6e-28 129.4 360 30.0
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 7.3e-28 129.0 352 26.7
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 9.5e-28 128.6 359 29.8
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 9.5e-28 128.6 360 26.7
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 1.2e-27 128.3 359 27.6
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.8e-27 127.1 355 28.7
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 3.6e-27 126.7 362 28.7
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 3.6e-27 126.7 355 27.0
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 8.0e-27 125.6 357 26.1
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 1.4e-26 124.8 364 28.0
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 5.2e-26 122.9 357 26.9
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 6.8e-26 122.5 355 28.2
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.2e-25 121.7 362 28.2
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.0e-25 120.9 354 27.4
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.0e-25 120.9 359 27.9
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 6.4e-24 115.9 256 30.1
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.9e-23 114.4 363 27.8
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.2e-23 113.6 387 27.1
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 2.0e-22 110.9 351 27.6
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.7e-22 110.5 259 28.6
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 4.6e-22 109.8 267 28.5
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 6.0e-22 109.4 255 27.1
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 5.0e-21 106.3 361 26.9
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 4.3e-20 103.2 225 28.0
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.2e-19 101.7 354 26.3
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 8.1e-19 99.0 378 26.2
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.2e-17 95.1 186 31.2
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 7.5e-17 92.4 362 25.7
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.9e-16 90.5 362 24.3
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 4.9e-16 89.7 212 27.8
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 8.3e-16 89.0 352 23.0
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 2.4e-15 87.4 203 31.0
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 7.3e-12 75.9 289 25.6
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 2.2e-08 64.3 116 31.0
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 3.2e-07 60.5 207 29.5


User provided reference genes

Program Settings