Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023858 Carpinus fangiana HOM05D004094 ORTHO05D004601 0.0e+00 2310.4 1193 100.0
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 2.4e-19 102.4 614 24.6
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 2.4e-19 102.4 401 28.4
Pp3c13_19570 Physcomitrium patens HOM05D004094 ORTHO05D004601 9.1e-19 100.5 373 27.6
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 1.2e-18 100.1 247 32.8
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 2.6e-18 99.0 453 26.7
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 3.4e-18 98.6 422 27.0
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 4.5e-18 98.2 385 28.3
AagrBONN_evm.TU.Sc2ySwM_368.377 Anthoceros agrestis HOM05D004094 ORTHO05D004601 1.7e-17 96.3 369 27.4
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 1.7e-17 96.3 396 28.5
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 2.2e-17 95.9 395 28.6
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 2.2e-17 95.9 368 26.4
Mapoly0007s0100 Marchantia polymorpha HOM05D004094 ORTHO05D004601 5.0e-17 94.7 468 27.6
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 6.5e-17 94.4 414 28.5
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 1.4e-16 93.2 378 28.3
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 1.9e-16 92.8 710 22.4
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 2.5e-16 92.4 438 25.3
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 2.5e-16 92.4 362 27.3
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 2.5e-16 92.4 362 26.2
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 3.2e-16 92.0 520 24.2
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 3.2e-16 92.0 362 26.5
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 3.2e-16 92.0 364 26.6
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 3.2e-16 92.0 369 27.9
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 4.2e-16 91.7 391 24.6
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 5.5e-16 91.3 472 24.6
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 5.5e-16 91.3 360 26.9
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 5.5e-16 91.3 363 27.5
SGA_v2.0_scaffold24G10467 Striga asiatica HOM05D004094 ORTHO05D004601 7.2e-16 90.9 415 26.3
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 9.4e-16 90.5 371 25.6
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 1.2e-15 90.1 521 24.2
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 1.6e-15 89.7 399 26.8
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 1.6e-15 89.7 360 28.6
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 1.6e-15 89.7 404 24.5
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 2.1e-15 89.4 381 27.0
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 3.6e-15 88.6 370 27.0
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 3.6e-15 88.6 261 32.2
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 3.6e-15 88.6 357 28.0
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 3.6e-15 88.6 391 24.3
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 3.6e-15 88.6 388 25.8
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 3.6e-15 88.6 395 25.1
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 4.7e-15 88.2 376 25.3
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 4.7e-15 88.2 366 25.1
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 6.1e-15 87.8 356 27.5
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 7.9e-15 87.4 432 25.0
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.0e-14 87.0 390 24.6
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 1.0e-14 87.0 356 24.7
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 1.0e-14 87.0 367 27.2
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.4e-14 86.7 384 26.3
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 1.8e-14 86.3 366 27.3
Zm00001eb398150 Zea mays HOM05D004094 ORTHO05D004601 1.8e-14 86.3 362 26.0
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 2.3e-14 85.9 380 24.7
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 2.3e-14 85.9 367 26.7
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 2.3e-14 85.9 258 28.3
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 2.3e-14 85.9 655 22.3
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 3.9e-14 85.1 378 25.7
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 5.1e-14 84.7 370 27.3
COL.COLO4_35941 Corchorus olitorius HOM05D004094 ORTHO05D004601 6.7e-14 84.3 388 25.8
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 8.8e-14 84.0 374 26.7
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 1.1e-13 83.6 360 25.6
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 1.5e-13 83.2 500 23.0
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 1.5e-13 83.2 361 26.3
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 1.5e-13 83.2 537 24.8
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 1.5e-13 83.2 360 25.3
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 2.0e-13 82.8 400 25.5
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 2.0e-13 82.8 385 26.2
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 2.0e-13 82.8 461 25.2
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 2.6e-13 82.4 367 28.1
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 2.6e-13 82.4 431 25.5
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 2.6e-13 82.4 389 26.2
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 2.6e-13 82.4 400 26.5
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 2.6e-13 82.4 390 24.6
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 3.3e-13 82.0 365 26.8
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 3.3e-13 82.0 257 28.0
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 4.4e-13 81.6 255 29.4
Pp3c12_8350 Physcomitrium patens HOM05D004094 ORTHO05D004601 4.4e-13 81.6 364 26.9
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 5.7e-13 81.3 357 26.6
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 7.4e-13 80.9 364 23.6
HanXRQChr10g0304931 Helianthus annuus HOM05D004094 ORTHO05D004601 9.7e-13 80.5 447 26.0
HPP92_002183 Vanilla planifolia HOM05D004094 ORTHO05D004601 9.7e-13 80.5 371 26.7
MSTRG.1451 Avicennia marina HOM05D004094 ORTHO05D004601 1.3e-12 80.1 396 25.3
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 1.3e-12 80.1 380 24.7
DCAR_014092 Daucus carota HOM05D004094 ORTHO05D004601 2.2e-12 79.3 372 25.3
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 2.8e-12 79.0 418 24.6
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 2.8e-12 79.0 398 26.4
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 3.7e-12 78.6 683 22.7
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 4.8e-12 78.2 370 23.0
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 6.3e-12 77.8 254 28.0
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 6.3e-12 77.8 401 24.2
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 1.1e-11 77.0 404 24.0
Os03g0262300 Oryza sativa ssp. japonica HOM05D004094 ORTHO05D004601 1.1e-11 77.0 405 24.9
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 2.4e-11 75.9 396 24.2
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 3.1e-11 75.5 375 24.0
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 4.1e-11 75.1 358 26.0
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 5.3e-11 74.7 380 24.2
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 5.3e-11 74.7 376 27.7
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 9.1e-11 73.9 378 23.5
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 9.1e-11 73.9 378 24.1
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 9.1e-11 73.9 378 23.5
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 2.0e-10 72.8 357 25.8
unitig_26.g9911 Utricularia gibba HOM05D004094 ORTHO05D004601 2.6e-10 72.4 408 25.0
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 7.7e-10 70.9 368 24.5
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 1.0e-09 70.5 358 24.6
CBR_g29736 Chara braunii HOM05D004094 ORTHO05D004601 1.0e-09 70.5 356 25.3
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 1.3e-09 70.1 366 24.3
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 1.3e-09 70.1 366 24.3
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 1.3e-09 70.1 366 24.3
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 1.3e-09 70.1 361 26.0
Psat3g082880 Pisum sativum HOM05D004094 ORTHO05D004601 1.7e-09 69.7 321 25.2
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 2.9e-09 68.9 374 25.1
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 5.0e-09 68.2 358 24.3
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 8.5e-09 67.4 388 26.5
CDE06G1261 Ceratophyllum demersum HOM05D004094 ORTHO05D004601 1.1e-08 67.0 323 26.0
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 1.5e-08 66.6 392 24.5
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 4.2e-08 65.1 361 26.9
SHI23046 Sapria himalayana HOM05D004094 ORTHO05D004601 7.2e-08 64.3 220 28.2
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 1.6e-07 63.2 396 23.0
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 2.1e-07 62.8 205 27.3
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 6.1e-07 61.2 394 22.8
MCO09G770 Micromonas commoda HOM05D004094 ORTHO05D004601 1.4e-06 60.1 421 24.0
Cre12.g521200 Chlamydomonas reinhardtii HOM05D004977 ORTHO05D006454 6.7e-06 57.8 241 26.1


User provided reference genes

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